You’ve buried soil water content and water potential sensors in the ground, installed an ATMOS 41 in the field, and set up your ZL6 data logger. Your network of instruments has been collecting data for days, weeks, or even all season. Now what? Performing soil moisture data analysis for your research location is one thing. Knowing how to extrapolate meaningful inferences and conclusions to understand what is happening and troubleshoot issues is completely different.
In this article, we will step through multiple data sets to understand how soil water content, soil temperature, soil water potential, and atmospheric measurements can be used to discover the meaning behind the traces. Within this article you will learn how to identify the following events in your data:
Behavior of soil moisture sensors in different soil types
Infiltration
Flooding
Soil cracking
Freezing
Spatial variability
Temperature effects
Diurnal patterns due to hydraulic redistribution
Broken sensors
Installation problems
Each example will be represented by a graph. It is not necessary to understand every aspect of information within these graphs. Each one is used as an illustration of common soil moisture data patterns you might run into and how to extrapolate the most useful information possible from the patterns seen. Each graph will have a box in the upper right-hand side corner with the soil type and crop type so you have a better understanding of the variables at play.
All of the data provided was collected by data loggers, such as our ZL6 series, and uploaded to ZENTRA Cloud for remote viewing at the convenience of the user. All data sets are either from METER’s own instrumentation or are supplied by the data owner and are included with their permission.
Figure 1. ZL6 Basic data logger with data collected and stored within the ZENTRA Cloud platform
Effects of soil types
Figure 2. Water content and water potential measurements for a turf grass in loamy sand in wet conditions
In Figure 2 we see the data from an engineered loamy sand with a cover crop of turf grass. Our goal when executing our experiments in this example was to improve irrigation in turf grass. This grass had a fairly shallow root zone, the middle of which was about six cm deep and the bottom at about 10 cm. Over time, this example showed first relatively wet conditions to start through June and July, a fixed drying period condition in July and August, and drying until the cessation of water uptake in August and September.
This graph shows two soil moisture data types: volumetric water content on the left y-axis and matric potential, or water potential, on the right y-axis. Time is on the x-axis ranging from early summer to the start of fall. To understand what these data clusters can tell us, we must look at each data set individually.
There’s a lot to consider when collecting soil moisture measurements.
Get your soil moisture questions answered in our Office Hours series.
Join Environment Support Manager, Chris Chambers, and Director of Science Outreach, Leo Rivera, as they discuss submitted questions all about getting the best soil moisture measurements.
In the full episode, they discuss:
How difficult is the calibration of dielectric sensors?
How does soilless media affect the operation of dielectric sensors?
How much can organic soil amendments influence soil moisture?
Is it possible to determine the soil hydraulic properties from soil water content?
Why volumetric water content instead of gravimetric water content?
What is the best way to correct for the temperature sensitivity of sensors?
What impact does direct solar radiation have on the overall radiation balance? Dr. Colin Campbell, WSU Environmental Biophysics professor and METER scientist, shows you how to do the calculations in our latest chalk talk.
Transcript
Hi, I’m Dr. Colin Campbell. And this is a METER Chalk Talk.
Have you ever been outside on a hot day walking in the full sun and then stepped into the shade? The relief is almost immediate. And I was thinking about that a lot when I was looking at this graph here, the estimated crop water loss on one of my experiments.
So this is an ET zero, meaning a reference ET. But since I was working grass, that was actually the estimated water loss from this grass crop. And what I noticed was that the shape of this curve kind of went up, and then went down. And it kind of matched right here, the solstice, the summer solstice. And in my mind, I thought, you know, what impact is direct solar radiation have on the overall radiation balance? Well, we can quickly just jump down and look at the equation that talks about how we might estimate the evapotranspiration from a crop. I’m not going to be able to have time here to get into what each of these variables mean.
But as you see, solar absorbed radiation, R abs is a strong component of that overall calculation. Now, when we talk about absorbed radiation, we need to understand that it’s not just all direct sunlight. In fact, if you assumed that, you’d be off in the weeds quite a bit, because it contains components of both longwave radiation, which is radiation that’s coming from your terrestrial surroundings, and shortwave radiation, that which is coming from predominantly the sun.
So let’s talk about that for a minute. With absorbed radiation, we have shortwave radiation. This is radiation that’s less than four micrometers. And we have longwave radiation. This is not surprisingly, from wavelengths greater than four micrometers. Now, this shortwave radiation, this comes from the sun longwave radiation comes from other sources, like trees, the sky, ground, just other objects that are around the temperature that we expect in the natural environment. Now, the truth of the matter is to get R abs, we need to combine both of these things into a single number. And it actually gets even more complex than that. So bear with us as we go on to the next equation.
R abs is a function of both shortwave radiation and long wave radiation. And when we calculate our radiation balance to get absorbed radiation, we have to actually take all of this into account. Now, you might be wondering, what are the other pieces in this equation, we’re going to spend a little time going over that. So you might understand how we can get from all of these numbers, all of these potential sources of radiation to a final number of R abs.
This portion of the equation here is shortwave radiation. And we’re going to talk about the variables in that equation. The first one we see is alpha s. It’s a number between zero and one. It signifies the percentage of shortwave radiation that the object can absorb. The other parameters in the equation include some F’s and some S’s. The F’s we call view factors, we’ll discuss view factors in more detail in another chalk talk. But suffice it to say that these essentially are parameters to estimate the amount of radiation that our object can see in its surroundings.
S stands for shortwave radiation. And this comes from several different sources. They include p: this is radiation that’s coming directly from the sun. That’s the one I mentioned earlier, that we feel if we’re standing in the direct sun, versus if we walk into the shade. But there are a couple of others. One is diffuse. This is the radiation that’s scattered as light comes into our atmosphere and it’s scattered by the atmosphere.
Finally, there’s R. This is reflected radiation, radiation that when it comes in, hits a surface, it reflects off that surface and comes and impinges on our object. Think about snow. If you’ve ever been skiing or out on the snow, you know, on a sunny day, you’re getting a lot of radiation that’s being reflected back. This portion of the equation over here is our longwave portion. Similar to our shortwave, it contains many of the same symbols, but they’re a little bit different.
The alpha L is the absorbed radiation. Now in the long wave that also goes from zero to one. The F is our view factor again, but now the view factor of longwave radiation, and L stands for that longwave radiation. This time, the subscripts A, that stands for atmosphere, and G stands for ground. If we put together all components in this equation, we’ll be able to solve for absorbed radiation. But that’s going to take a little bit of work. First, we need to understand the absorptivity of our surface both in the shortwave and the longwave.
The shortwave typically is calculated just from tables from looking out on the internet. For example, if I wanted to look at the absorptivity of a maple leaf, that’s typically around 50%. But it’s something that’s probably been calculated in literature. For our longwave radiation, almost all objects absorb long wave radiation at about 97 to 98% of the possible total.
So it’s pretty easy to estimate these absorptivities for objects that are fairly common. Calculating solar radiation and long wave radiation take a little bit more time. And especially understanding the view factors or how much of a particular surface our object sees, is going to take a whole chalk talk on its own. We’re going to leave this discussion here and leave for next time an opportunity to talk about how to calculate our shortwave radiation, or long wave radiation, and then get to the complicated discussion of view factors.
For more content like this, head over to our YouTube channel, or go to metergroup.com. Thanks for watching METER chalk talks.
Drs. Kim Novick and Jessica Guo team up to discuss the vital role water potential measurement plays in both plant and soil sciences and the work they are doing to establish the first-of-its-kind nationwide water potential network. Join their discussion to understand how a communal knowledge of these measurements could impact what we know about climate change and ecology as a whole.
A water potential measurement network could increase our understanding of climate change and ecology.
Dr. Kim Novick is a professor, Paul H. O’Neill Chair, Fischer Faculty Fellow, and director of the Ph.D. Program in Environmental Sciences at Indiana University. She earned her bachelor’s and Ph.D. in environmental science at Duke University’s Nicholas School of the Environment. Her research areas span ecology and conservation, hydrology and water resources, and sustainability and sustainable development, with specific interests in land-atmosphere interactions, terrestrial carbon cycling, plant ecophysiology, and nature-based climate solutions.
Dr. Jessica Guo is a plant ecophysiologist and data scientist who studies plant-environment interactions under extreme climate conditions. She earned her bachelor’s in environmental biology from Columbia University and her Ph.D. in biological sciences from Northern Arizona University. She is currently at the University of Arizona, where she blends her passion for reproducible workflows, interactive visualizations, and hierarchical Bayesian models with her expertise in plant water relations.
The views and opinions expressed in the podcast and on this posting are those of the individual speakers or authors and do not necessarily reflect or represent the views and opinions held by METER.
Like a silent battle cry, plants call out to signal they are under siege as a warning to other plants and to call in reinforcements to fend off the invasion.
Listen to research on pathogen infection, water stress, and how plants communicate and defend themselves.
How does this communication work? What else are plants doing to protect themselves from disease and predators alike? In our latest podcast, Natalie Aguirre, a PhD candidate and plant physiology and chemical ecology researcher at Texas A&M University, dives into her research on pathogen infection, water stress, and how plants communicate and defend themselves.
Natalie Aguirre graduated with a degree in biology from Pepperdine University, where she completed an honors thesis conducting research on the interaction of drought stress and pathogen infection in chaparral shrubs. She then spent a year as a Fulbright scholar in Spain, studying the effect of water stress on Dutch Elm Disease. Most recently, Natalie worked for the Everglades Foundation, creating educational programs and materials about the Florida Everglades.
The views and opinions expressed in the podcast and on this posting are those of the individual speakers or authors and do not necessarily reflect or represent the views and opinions held by METER.
As world water demand increases and supplies decrease, how can we turn more of the water we use for agriculture into biomass? In this webinar, Dr. Campbell dives deep into the measurement and implications of making the most of every drop of water.
Learn how to measure the amount of water a crop will need.
Crops turn sunlight, water, carbon dioxide, and nutrients into food
The availability of those resources puts limitations on the amount of food a crop can produce. A previous webinar considered the limitations of sunlight. In this 30-minute webinar, world-renown environmental biophysicist, Dr. Gaylon S. Campbell, discusses how to measure the amount of water a crop will need and how to use that value to predict the amount of biomass it will produce.
Achieve maximum biomass from every drop
Join Dr. Campbell as he discusses the measurements and calculations needed to know how much biomass a given environment can produce. Dr. Campbell will discuss:
How resource capture models work
How biomass production and water use are linked
Examples of effective uses of water resource capture models
Instrumentation needed to determine water and radiation limitations on yield
How to use soil and atmospheric measurements to quantify crop water capture
Water budgets and how they are used to get transpiration and biomass production
Dr. Campbell has been a research scientist and engineer at METER for 19 years following nearly 30 years on faculty at Washington State University. Dr. Campbell’s first experience with environmental measurement came in the lab of Sterling Taylor at Utah State University making water potential measurements to understand plant water status. Dr. Campbell is one of the world’s foremost authorities on physical measurements in the soil-plant-atmosphere continuum. His book written with Dr. John Norman on Environmental Biophysics provides a critical foundation for anyone interested in understanding the physics of the natural world. Dr. Campbell has written three books, over 100 refereed journal articles and book chapters, and has several patents.
Abiotic stress in plants: How to assess it the right way
As a plant researcher, you need to effectively assess crop performance, whether you’re selecting the best variety, trying to understand abiotic stress tolerance, studying disease resistance, or determining climate resilience. But if you’re only measuring weather data, you might be missing key performance indicators. Water potential is underutilized by plant researchers in abiotic stress studies even though it is the only way to assess true drought conditions when determining drought tolerance in plants. Learn what water potential is and how it can improve the quality of your plant study.
Soil directly impacts plant growth via nutrient availability, disease pressure, root growth, and water availability.
Quantitative genetics in plant breeding: why you need better data
If you’ve studied plant populations, you’re probably familiar with the simplified equation in Figure 1 that represents how we think about the impact of genetics and the environment on observable phenotypes.
Figure 1. Phenotype = Genotype + Environment
This equation breaks down the observed phenotype (plant height, yield, kernel color, etc.) into the effects from the genotype (the plants underlying genetics) and the effects of the environment (rainfall, average daily temperature, etc.). You can see from this equation that the quality of your study directly depends on the kind of environmental data you collect. Thus, if you’re not measuring the right type of data, the accuracy of your entire study can be compromised.
Water potential: the secret to understanding water stress in plants
Drought studies are notoriously difficult to replicate, quantify, or even design. That’s because there is nothing predictable about drought timing, intensity, or duration, and it’s difficult to make comparisons across sites with different soil types. We also know that looking at precipitation alone, or even volumetric water content, doesn’t adequately describe the drought conditions that are occurring in the soil.
Figure 2. The TEROS 21 is a field sensor used to measure soil water potential
Soil water potential is an essential tool for quantifying drought stress in plant research because it allows you to make quantitative assessments about drought and provides an easy way to compare those results across field sites and over time. Let’s take a closer look to see why.
In this chalk talk video, world-renowned soil physicist, Dr. Gaylon Campbell, discusses how many measurements researchers and growers need to characterize soil moisture at a field or research site. He explores the question: What is the relationship between the measurements that you make and the underlying value of water content in the field?
Presenter
Dr. Gaylon S. Campbell has been a research scientist and engineer at METER for 19 years following nearly 30 years on faculty at Washington State University. Dr. Campbell’s first experience with environmental measurement came in the lab of Sterling Taylor at Utah State University making water potential measurements to understand plant water status. Dr. Campbell is one of the world’s foremost authorities on physical measurements in the soil-plant-atmosphere continuum. His book written with Dr. John Norman on Environmental Biophysics provides a critical foundation for anyone interested in understanding the physics of the natural world. Dr. Campbell has written three books, over 100 refereed journal articles and book chapters, and has several patents.
We quite often get a question from customers about how many measurements we need to characterize soil moisture at a site. And so that’s what I want to talk about today. A number of years ago, I knew a man who was wanting to provide a business of making soil moisture measurements for the purpose of irrigation scheduling for farmers. And he came to me wondering how many samples he should take. He figured that he wanted a fairly simple way of determining soil moisture.
So, he thought he would go into the field and he would collect soil samples from the field, he would take them back to the laboratory, he would dry them and weigh them and dry them and determine water content. And he wondered how many samples would be required to determine the water content to provide this information for a farmer.
Now, that’s not so different from the kinds of information that are often required either for practical applications like irrigation scheduling, or for research purposes. We can see the broader applications of the question of, “what’s the relationship between the measurements that we take and the underlying value of water content in the field?”
Soil water content will vary from place to place.
I think you can see that the same thing would apply whether we were taking samples and bringing them back to the laboratory, or if we were putting in soil moisture sensors, and wanting to monitor soil moisture in the field. So, the first thing we need to talk about soil moisture is a random variable, we need some vocabulary for talking about that. Two terms are important: mean and standard deviation.
If we were to collect many samples of water content from a field, and we were to plot the number of samples versus the water content of the samples, we would obtain a relationship something like this. We would get the most samples around some central value, and that central value is the mean.
The standard deviation is a measure of the dispersion around the mean. 68% of the values that we take would be within plus or minus one standard deviation of that mean value. 95% would be within plus or minus two standard deviations of the mean value.
So, let’s say that we walked out here in the field, and we took a sample and made a measurement on it. And let’s say out of that sample, we determined the water content was 27%. Now let’s say that we assume or we know from some means that the standard deviation is 3%. Then, by these ideas, we would know that the mean value – the expected value for the water content – is or at least there would be a 95% probability that the mean value of the water content would be somewhere between 21% and 33%. The mean value plus two times the standard deviation and the mean value minus two times the standard deviation.
Now we may say, “well that’s not good enough. We need better values than that. So what do we do? We need to take more samples. And so we take a number of samples and average them. And so we can know what the result of averaging several samples is, with a simple relationship. The uncertainty in the average value that we get–the standard deviation of the mean–is the standard deviation, divided by the square root of the number of samples.
So let’s say that we went out in the field, and we took 100 samples. Then the standard deviation of the mean, would be our standard deviation that we assumed before, divided by the square root of 100. The square root of 100, of course, is 10. And so that would be 0.3%. If we determined a value of 28% for that mean of the 100 samples, then with 95% confidence, we can say that the water content is between 27.4 (2 standard deviations below the mean), and 28.6.
Now we’re getting closer then to our quest of determining the number of samples that we need to take. We start out with that equation that we just had that the standard deviation of the mean is equal to the standard deviation divided by the square root of the number of samples. We can rearrange that to say that the number of samples that we need is equal to the standard deviation divided by the standard deviation of the mean, and that value squared. So, the error that we normally would talk about in the measurement–if we’re again talking about 95% confidence–the error is half of the standard deviation of the mean.
This number of samples is two times the standard deviation over the air, and that all squared. So, if we work through a little problem with that, how many samples would we need in order to know the water content within 1%? If the standard deviation is 3%, the way we’ve assumed.
So, the standard deviation is 3%. The error value that we want to get to is 1%. We want to take enough samples so that we have 95% confidence that we’re within 1%. And so the number of samples is 2 times 3%, divided by the air, 1%, and that’s all squared. And that comes out to be 36 samples. Well, when we see that number, typically we get pretty discouraged. That’s more samples than we want to take. More samples probably than we can afford to take.
To see how that relates to reality, we did a little experiment. Here we have a soccer field out behind the METER (formerly Decagon) building. We went out and took one of our sensors, the GS3, and hooked it up to our little handheld device. And we set up three transects 20 meters long, parallel with each other and spaced a meter apart. We went along and took samples every meter along these transects. And I have a little video here that shows how that sampling went. The result of that sampling is shown in this next slide.
This slide shows the result of that set of measurements that we made. And you can see it looks about like you would expect it to. We’ve got some variation, we show a mean value and some variation around it. The transects, again, showed variability but seemed to be showing about the same result for each transect. We had 60 samples there.
The average water content that we computed was 38.6%. The standard deviation was not 3%, but 5%. So, the situation is even worse than we imagined with these calculations that we just did here. With a standard deviation of 5%, if we want to know the water content within 1%, we would need 100 samples to do that. And so even with our 60 samples, here, our standard deviation of the mean is 0.65%. And so our field water content is somewhere between 37.3 and 39.9.
Well, as I say that usually is discouraging when we get to that point and see how many samples are needed to make a set of measurements, but the thing is that quite often, the thing that we need to know is not an accurate value for the average water content. Quite often, what we want to know is how much the water content is changing. And that we can know in other ways, accurately enough, so that we don’t need that many samples.
That person that I started out talking about who was wanting to schedule irrigation would need to know water content with an accuracy of 1%. Well, at least with a precision of 1% or better. But that could be achieved much more readily by installing a sensor in situ, where you’re not dealing with the spatial variability in the soil and monitoring that.
Here I’ve shown some data that we took in the field with one of our 5TE sensors hooked up to a data logger. The water content is sampled every minute, it’s averaged over hour intervals, and the plot that you see here is a plot of the water content measured each hour. Then, you can see a period of time where the soil is drying, because the plants are using water. You can see an increase in water content that results from adding water through irrigation or rain. And then again, the water content decreasing as the water is used. And you see very little variation in those data.
Now if this guy that wanted to provide the irrigation scheduling service, had wanted to do this same thing by sampling, the next slide shows the result that he would have gotten if he had gone out every hour and taken one soil sample and plotted the result.
This is what he would have gotten; the blue lines that you see. And you can see that it’s about what you would expect: that the highest values are about 10% higher than the mean value, the lowest values are about 10% lower, and the standard deviation we said is about 5. So, that’s about what we would expect. But from these kinds of data, there’s no possibility that you could ever tell when you should irrigate.
In the next slide, I show the result that you would have gotten if you went out and took 10 samples every hour. And here you can see the pattern to some extent of when the drying and wetting occur, but there’s still an awful lot of variation.
The next slide shows the result of taking 100 samples every hour, a ridiculous thought, but again, there’s still some variation in it. It still doesn’t look anywhere near as good as the in situ sample. When we’re just looking for the changes in water content, the water storage, and water use, in situ measurements make a lot more sense than soil moisture sampling.
So, let me conclude just by a few points that I hope to have made in this. First of all, the soil water content varies from place to place; that’s inherent in nature. It’s something that we expect anytime we go out to measure soil moisture. We usually need to take an average of moisture at several locations in order to know what the water content of a field is, or an experimental site. We usually can’t afford to take enough measurements to really know what it is to have it within the accuracy that we would like to have it. And so we can go through this exercise that I’ve gone through here, we can determine the number that we need, but usually, our budget won’t allow us to put in that many and so we end up compromising to some extent.
In our latest podcast, Dr. Cristine Morgan, one of the US’s premier soil scientists and Chief Scientific Officer at the Soil Health Institute shares her views on soil health: what it is, how to quantify it, what’s the payoff, and why it’s so critical to our success as a society.
“Our soils support 95 percent of all food production, and by 2060, our soils will be asked to give us as much food as we have consumed in the last 500 years.” (Credit: https://livingsoilfilm.com/)
Her thoughts? “We all live or die by soil, literally. We just have to remind people that it’s about quality of life. It’s about the food that you eat. It’s about the safety and welfare of your children.”
Dr. Cristine Morgan is the Chief Scientific Officer at the Soil Health Institute in North Carolina. Learn more about the Soil Health Institute on their website.
The views and opinions expressed in the podcast and on this posting are those of the individual speakers or authors and do not necessarily reflect or represent the views and opinions held by METER.
In our latest podcast episode, Kevin Hyde, manager of the Montana Mesonet, discusses his views on predicting and mitigating the effects of flood and drought.
Montana’s large geographical area makes mesonet equipment maintenance a challenge.
He also shares how to build a robust weather network with high-quality data on a small budget, why setups should include other measurements such as soil moisture and NDVI, and the genius way he handles maintenance over such a large geographical area.
The views and opinions expressed in the podcast and on this posting are those of the individual speakers or authors and do not necessarily reflect or represent the views and opinions held by METER.
