Skip to content

Posts from the ‘Soil moisture sensors’ Category

What Does SMAP Mean for In Situ Soil Water Content Measurement?

With the recent news coverage of the SMAP (Soil Moisture Active Passive) satellite launch, researchers may wonder:  what does remote sensing mean for the future of in situ measurements?  We asked two scientists, Drs. Colin Campbell and Chris Lund, for answers to this complex question.  Here’s what they had to say:

Satilight Sending Pictures to Earth

Image: www.jpl.nasa.gov

What is SMAP?

SMAP is an orbiting earth observatory that estimates soil moisture content in the top 5 cm of soil over the entire earth.  The mission is three years long with measurements taken every 2-3 days. This will allow seasonal changes around the world to be observed over time, improving our ability to manage water resources and better parameterize land surface models.  SMAP determines the amount of water found between the minerals, rocky material, and organic particles found in soil by measuring the ability of radar to penetrate the soil.  The wetter the soil is, the less the radar will penetrate.  SMAP has two different sensors on the platform: an L band aperture radar with a resolution of about a kilometer when it’s looking straight down (the pixel size is about 1 km by 1 km), combined with a passive radiometer with about 40 km of resolution.  This combination creates a synthetic product that takes advantage of the sensitivity of the radiometer.

What does SMAP mean for in situ soil water content measurement?

It’s all about scale: In some ways, comparing in situ to SMAP measurements is like comparing apples to…well…mountain-sized apples.  The two forms of measurement use vastly different scales.  In situ soil moisture sensors measure water content at the volume of several liters of soil, maximum. Even the sensor with the largest field of sensitivity, the neutron probe, can only integrate a volleyball-sized volume.  On the other hand, SMAP measures at a resolution of 1 km2, which is larger than the size of a quarter section, a large field for many farmers. Global soil moisture maps will allow scientists using SMAP to look at big picture applications like weather, climate and hydrological forecasting, drought, and flooding, while more detailed in situ measurements will tell a farmer when it’s time to water, or help researchers discover exactly why plants are growing in one location versus another.  The difference in spatial scale makes the two forms of measurement useful for very different research purposes and applications. However, there are applications where the two measurements can be complementary. Most notably, in situ measurements are often temporally rich while being spatially poor. But, SMAP can be used to scale in situ measurements to areas where in situ measurements are absent. In situ measurements can also be used as a source of validation data for SMAP-derived values for any location where both in situ and SMAP measurements overlap. Thus, there is opportunity for synergy when pairing SMAP and in situ measurements.

A Map

Satellite image in Winter.

What can SMAP do that in situ measurement can’t?

Scientists say they’ve seen a relationship between the top 5 cm of soil moisture and some factors related to climate change and weather. Because in situ soil sensors sample across a spatial footprint of a few meters, it can be very difficult to use their data to say anything about processes occurring across broad spatial scales; two liters of soil is not going to tell you anything about weather or flooding.  SMAP can help us better understand the interaction between the land surface and atmosphere, improving our understanding of the global water cycle as well as regional and global climate. This will help with forecasting crop yield, pest pressure, and disease…that’s big picture research.

 The productivity of a forest also may depend on the general soil moisture measured by SMAP.  For instance, if we got an idea of the soil moisture and greenness of a forest, we could tie together the approximate water availability and the resulting biomass accumulation with incoming solar radiation.  Better biomass accumulation models could lead to better validation of global carbon cycle models.

SMAP will also be able to detect dry areas across the U.S. and challenges they might present. Surface runoff that leads to flooding could also be predicted as scientists will be able to see where soils reach saturated conditions.

In other applications, people working on global water or energy budgets have to parameterize the land surface in terms of how wet or dry it is. That’s the big advantage of SMAP’s relatively new data sets.  Any time you’re running a regional climate model you have to parameterize what the soil moisture is in order to partition surface heat flux into sensible and latent heat flux. If there’s a lot of available water, it’s weighted more toward evaporation and less toward sensible heat flux.  In areas where there’s little available water and low evaporation, you get high surface temperatures and sensible heat flux.  So SMAP will be important for model parameterization as we haven’t had a good global data set for soil moisture until now.

Dirt with a Root Sticking Out of it

In situ sensors show how much water is lost from the root zone and what is still left.

What can in situ sensors do that SMAP can’t?

In irrigated agriculture, farmers need to know when and how much to irrigate.  In situ sensors give them this information by showing how much water was lost from the root zone and what is still left.  SMAP is unable to tell you what’s down in the root zone; it only reaches to 5 cm.    Additionally, 1 km resolution is larger than most irrigation blocks. These factors mean that it will be difficult to make irrigation decisions from SMAP alone.

Scientists using in situ sensors are concerned with the soil moisture available in a local area because their time resolution is excellent and they have the ability to resolve what’s happening in particular conditions related to crops or natural systems.  Natural systems are often heterogeneous, meaning there may be adjacent areas with different types of vegetation including trees, shrubs, and grass.  Tree roots may grow deep while grass roots are shallow.  Being able to look over all these different areas without averaging them together, as SMAP does, is critical in some applications.

 What about geotechnical applications?  Literature suggests SMAP output can help predict landslides. It is more likely that it can only see when the soil is generally saturated and generate a warning. But in slopes that are at risk of landslides, in situ monitoring with sensors such as tensiometers to measure positive pore water pressure may be more useful for determining when a slide is imminent.

SMAP, like in situ water content measuring systems, is also limited by the fact that it measures the amount, not the availability, of water. If it measures 23% water content in a certain area, that measurement may not tell us what we want to know. A clay soil at 23% VWC will be close to wilting point while a sand would be above the plant optimal range. SMAP doesn’t measure the energy status of water (water potential), so even if SMAP tells us a field has water content, that water might not be readily available.  Water availability must be determined through a pedo-transfer function or moisture release curve appropriate for a specific soil type (It is possible to overlay SMAP data on soil type data to estimate energy state, but this might not be fine enough resolution to be useful).

Complementary Technology

How do SMAP and in situ instruments work together?  The key is ground truthing in situ soil moisture measurements with SMAP type satellites and vice versa.  Ground-based measurements at specific locations can be matched with satellite information to extrapolate over a field and gain confidence in the small continuous scale alongside the larger infrequent scale.  It’s analogous of a video camera recording one plant continuously while a single shot camera snaps whole-field pictures every day.  With the SMAP “single-shot” we can say, something changed from time A to time B, but we don’t know what happened in the middle (rain event, etc.). In situ measurements will tell us the details of what happened in between each snapshot.  Putting both data sets together and matching trends, we can show correlation and complete the soil moisture picture.  Basically, In situ measurements provide temporally rich information about soil moisture from a postage stamp-sized area of earth’s surface (driven by highly localized conditions), whereas SMAP gives us the ability to monitor broad scale spatiotemporal patterns across all of earth’s surface (driven by synoptic conditions).

Download the “Researcher’s complete guide to soil moisture”—>

Download the “Researcher’s complete guide to water potential”—>

Get more information on applied environmental research in our

Could This Farming Practice Make Food Grown in Fukushima Safe?

March 11, 2015 marks four years since the Fukushima disaster.  What have we learned?

Shortly after the Fukushima disaster, we donated some of our sensors to Dr. Masaru Mizoguchi, a scientist colleague at the University of Tokyo.  He is using the equipment to contrive a more environmentally friendly method to rid rice fields in the villages near Fukushima of the radioactive isotope cesium 137.

Over the last three years, government contractors removed 5 cm of topsoil from fields in order to extract the radioactive isotope. The topsoil has been replaced with sand.  The problem with this method is that it also removes most of the essential soil material, leaving the fields a barren wasteland with little hope of recovery anytime soon.  Topsoil removal may also prove ineffective because wild boars dig up the soil to root for insects and larvae.  This presents a problem in the soil stripping method, as it becomes impossible to determine exactly where the 5 cm boundary exists.  In addition, typhoons and heavy rains erode the sand surface raising safety and stability concerns.

Trash Bags Full of Radioactive Topsoil

Currently, bags full of radioactive topsoil are stacked into pyramids in abandoned fields. An outer black bag layer filled with clean sand is placed around the outside to prevent radiation leakage. The government has promised that these bags will be removed and taken to a repository near the destroyed reactor, but many people don’t believe that will happen as the bags themselves only have a projected life of 3-5 years before they start to degrade. More of these pyramids are being built around Iitate village every day, which is a source of uneasiness for many people that are already cautious about returning.

Dr. Mizoguchi and his colleagues have come up with a new “flooding” method now being tested in smaller fields that can save the topsoil and organic matter while at the same time removing the cesium, making the land usable again within two years.  The new method floods the field and mixes the topsoil with water, leaving the clay particles suspended. Because the cesium binds with the clay, they can drain the water and clay mixture into a pre-dug pit and bury it with a meter of soil after the water has infiltrated.  After one year of using this method, the scientists saw that the cesium levels in the rice had gone down 89%.  And in situ and laboratory instrumentation have shown that two years after cesium removal, the plants’ cesium uptake is negligible, and the food harvested is safe for consumption.

Researcher standing by a sensor station

Dr. Mizoguchi standing by a sensor station containing Decagon sensors

Dr. Mizoguchi is monitoring the surrounding forests with our canopy and soils instrumentation in order to determine if runoff from the wilderness areas will return cesium to the fields and what can be done about it.  He’s figured out a way to network all the instrumentation and upload data directly to the cloud. Still, even if this technology and new methodology work, will people around the world ever feel safe eating food grown near Fukushima?  Dr. Mizoguchi says, “I believe that the soil is recovered scientifically and technically.  However, harmful rumors will remain in the public mind for a long time, even if we show the data that proves safety.  So we must keep showing the facts on Fukushima based on scientific data.”

Resurrection of Fukushima Volunteers using Dr. Mizoguchi's method to rehabilitate small farms

Resurrection of Fukushima volunteers use Dr. Mizoguchi’s method to rehabilitate small farms

Incredibly, each weekend a volunteer organization of retired scientists and university professors use their own money and time to travel out to small village farms.  There they labor to rehabilitate the land using Dr. Mizoguchi’s method.  One of the recipients of this selfless work is a 72-year-old farmer who took his nonagenarian mother and returned to their home to fulfill her heartfelt plea that she could live out her final years outside the shadow of a highrise apartment (see this story in the video above).  We are honored to be a part of this humanitarian effort.

Download the “Researcher’s complete guide to soil moisture”—>

Get more information on applied environmental research in our

Are Arduinos Practical and Cost Effective?

Last spring my daughter, Sarah, needed a project for the science fair, and since she has always been interested in scientific measurements, we decided to try and figure out when it was time to water her mother’s plants. Since we’ve fielded a lot of calls from customers asking about using Arduinos (user-programmable microprocessors) lately, I thought I would kill two birds with one stone and give one a try. My preference would have been the speed and simplicity of a METER data logger, but I was curious about how practical and cost-effective this method might be for taking measurements.

Young Girl Concentrating on Helping with the Soldering

Arduino Science Project with my daughter

The Arduino is an inexpensive, user-programmable microprocessor on a circuit board that has exposed analog inputs for measuring voltages and digital ports for measuring incoming digital signals. It can also run displays and is programmed by an Arduino IDE running on your computer.

I purchased a book called Arduino Recipes that taught us the basics of Arduino programming, which was pretty straightforward. The Arduino board itself has rows of pinheaders, so I brought some of the male pinheaders from work and soldered all the wires to them, in preparation to attach the water content sensor. It looked medusa-like with all the wires coming off the pinheaders, but we could then just hook up kid-friendly snap circuits and try some elementary tests to get used to the system.

We hooked up Decagon’s (now METER) analog water content sensor (EC5)  first and started measuring. It has a really nice calibration equation supplied by METER, so we used that for a while to measure water content. We took one of mom’s dry plants and measured before and after watering and used the readings to make a linear relationship between the reading on the sensor when it was dry and the reading on the sensor when it was wet.

Small Cactus in the Window

Our biggest challenge was that Sarah wanted to display this to mom to make sure she knew when to water the plants. So she and I then had to figure out how to integrate an LCD display.

Sarah was excited to get the digital soil moisture sensor integrated because we could then measure water content AND electrical conductivity (EC) to get an idea of the fertilizer in the soil. We used my work colleague’s code to read the digital sensor output, which worked quite well.  It only took a few minutes to insert his piece in the code into our program and start reading water content. Our biggest challenge was that Sarah wanted to display this to mom to make sure she knew when to water the plants. So she and I then had to figure out how to integrate an LCD display. Luckily, all the details were on the Arduino website.  We just cut and pasted the code into our program and then did all the wiring.

Finally, we had it all put together, and we inserted the 5TE digital sensor into the pot. It worked, but the device was large and unwieldy. Mom wasn’t happy that we were putting it right in the middle of her clean living room, but Sarah pointed out that we have to make sacrifices for science, so we put the sensors in the soil, set up the display, and ran it for about a week. Sarah took water content data morning and night and watered it when it reached our “dry” point. She took the finished system to the science fair and was excited to find a few future customers.

Close up on a circuit board

The biggest challenge would be all the details in the system. We’d need a circuit board, a power supply, a data logging interface board, and a box to put it in, and if we were going to set it outside, that box would have to be waterproof.

Are Arduinos practical for use in your experiments?

It depends. Sarah and I found out that it just doesn’t take a lot to integrate a sensor into the Arduino system and be able to make measurements. However, if we were to try the above experiment long-term, the biggest challenge would be all the details in the system. We’d need a circuit board, a power supply, a data logging interface board, and a box to put it in, and if we were going to set it outside, that box would have to be waterproof. We’d also need ways to connect the sensor to the circuitry, and all these things take time and resources. For me, the take-home message was that Arduinos are a lot of fun, and might fit your application exactly the way you want. However, you’ll need time (often a lot of it) to spend making sure it’s waterproof, doing all the programming, writing a code durable enough to fit your field applications, and getting the hardware prepped. In fact, Decagon support staff take calls every week from frustrated do-it-yourselfers who’ve found this is not as easy as it seems. Thus, in my opinion, an EM50 or Campbell Scientific data logger are more practical options than an Arduino-like microprocessor.

Are Arduinos cost effective?

A lot of scientists want to make measurements out in the field with small budgets. I am certainly one of those. Arduinos are $85 versus a complete data logger that costs several hundred dollars. However, people tend to forget that things like labor even cost discrepancies.

So, if you have plenty of time, want the versatility, and you love this stuff, go ahead and make an Arduino sensor, but at the end of the day, the cost shouldn’t be a driver, because there are data loggers that can do the job of an Arduino more simply and quickly, without all the hassle.

Download the “Researcher’s complete guide to SDI-12″—>

Download the “Researcher’s complete guide to water potential”—>

Download the “Researcher’s complete guide to soil moisture”—>

Get more information on applied environmental research in our

Despite Drawbacks, Scientific Collaboration Pays Off

Though collaboration can fuel innovation and increase the relevance and complexity of the scientific questions we study, I’ve noticed it does have its ups and downs.  The highs and lows we’ve run into on our research projects may help others avoid some of the pitfalls we experienced as many diverse groups tried to learn how to work together.

collaboration

Researchers discussing science at the Lytle Ranch Preserve, a remarkable desert laboratory located at the convergence of the Great Basin, Colorado Plateau, and Mojave Desert biogeographical regions.

There can be bumps in the road when collaborating with companies who want to test their product. Being at the forefront of innovation means that untested sensors may require patience as you work out all the bugs together. But from my perspective, this is part of the fun.  If we are late adopters of technology, we wouldn’t get to have a say in creating the sensors that will best fit our projects as scientists.

Collaborating scientists can also sometimes run into problems in terms of the stress of setting up an experiment in the time frame that is best for everyone.  During our experiment on the Wasatch Plateau, we had six weeks to get together soil moisture and water potential sensors, but our new GS3 water content, temperature, and EC sensors had never been outside of the lab. In addition, we planned to use an NDVI sensor concept that came out of a workshop idea my father Gaylon had.  We’d made ONE, and it seemed to work, but that is a long way from the 20 we needed for a long-term experiment in a remote location at 3000 meters elevation. In the end, it all worked out, but not without several late nights and a bit of luck.  I remember students holding jackets over me to protect me from the rain as I raced to get the last sensor working.  Then we shut the laptop and ran down the hill, trying to beat a huge thunderstorm that started to pelt the area.

collaboration

Desert-FMP Researchers at the Lytle Ranch Preserve

Other challenges of scientific collaboration present organizational hardships.  One of the interesting things about the interdisciplinary science in the Desert FMP project is the complexity of the logistics, and maybe that’s a reason why some people don’t do interdisciplinary projects.  We are finding in order to get good data on the effects of small mammals and plants you need to coordinate when you are sampling small mammals and when you’re sampling plants.  Communicating between four different labs is complicated.  Each of the rainout shelters we use cover an area of approximately 1.5 m2 .  That’s not a lot of space when we have two people interested in soil processes and two people interested in plants who all need to know what’s going on underneath the shelter.  Deciding who gets to take a destructive sample and who can only make measurements that don’t change the system is really hard.  The interesting part of the project where we’re making connections between processes has required a lot of coordination, collaboration, and forward-thinking.

In spite of the headaches, my colleague and I continue to think of ways we can help each other in our research.  Maybe we’re gluttons for punishment, but I think the benefits far outweigh the trouble we’ve had.  For instance, in the above-mentioned Desert FMP project we’ve been able to discover that small mammals are influential in rangeland fire recovery (read about it here).  We only discovered that piece of the puzzle because scientists from differing disciplines are working together.  In our Wasatch Plateau project, my scientist colleague said it was extremely helpful for him to be working with an instrumentation expert who could help him with setup and technical issues.  Also, we’ve been able to secure some significant grants in our Cook Farm Project (you can read about it in an upcoming post) and answer some important questions that wouldn’t have occurred to either one of us, if we hadn’t been working together.  In addition, solving problems that have cropped up in our projects has spurred us on to a new idea for analyzing enormous streams of data in near-real time.  (read about it here).

Download the “Researcher’s complete guide to water potential”—>

Download the “Researcher’s complete guide to soil moisture”—>

Get more information on applied environmental research in our

TDR versus Capacitance or FDR

When we talk with scientists at conferences they often want to know the difference between TDR versus capacitance or FDR.  We’ve written a paper about this in our app guide that has been pretty popular, but it can be difficult to find on our website. Here is an introduction and a link if you are interested in learning more.

TDR Sensor Installation (Giulio Curioni, School of Civil Engineering, Univ. of Birmingham)

TDR Sensor Installation (Giulio Curioni, School of Civil Engineering, Univ. of Birmingham)

Capacitance and TDR techniques are often grouped together because they both measure the dielectric permittivity of the surrounding medium. In fact, it is not uncommon for individuals to confuse the two, suggesting that a given probe measures water content based on TDR when it actually uses capacitance.

TDR

10HS capacitance sensor

With that in mind, we will try to clarify the difference between the two techniques. The capacitance technique determines the dielectric permittivity of a medium by measuring the charge time of a capacitor, which uses that medium as a dielectric. We first define a relationship between the time, t, it takes to charge a capacitor from a starting voltage, Vi , to a voltage V, with an applied voltage, Vf.  Read more….

Watch the webinar

In this webinar, Dr. Colin Campbell discusses the details regarding different ways to measure soil moisture and the theory behind the measurements.  In addition, he provides examples of field research and what technology might apply in each situation. The measurement methods covered are gravimetric sampling, dielectric methods including TDR and FDR/capacitance, neutron probe, and dual needle heat pulse.

 

Take our Soil Moisture Master Class

Six short videos teach you everything you need to know about soil water content and soil water potential—and why you should measure them together.  Plus, master the basics of soil hydraulic conductivity.

Watch it now—>

Download the “Researcher’s complete guide to soil moisture”—>

New Applications in Archeology for TDR Probes Measuring Water Content

Recently, I spent a day at the University of Birmingham in the UK where I talked with Dr. Nicole Metje and researchers in the Civil Engineering department.  They are working on a project called, “Mapping the Underworld,” (Curioni G., Chapman D.N., Metje N., Foo K.Y., Cross J.D. (2012) Construction and calibration of a field TDR monitoring station. Near Surface Geophysics, 10, 249-261) where they are using TDR probes to help locate buried objects that require maintenance.

tdr probes

University of Birmingham Clock Tower

Currently, people use rudimentary tools to poke around and figure out where the buried object is.  A more effective high-tech solution is GPR (Ground Penetrating Radar) that is pulled over the top of the soil and creates a 2D image of permittivity below the ground surface.  The problem is GPR only provides relative depth information and must have ancillary data to produce actual values. To address this issue, their group uses TDR probes (time domain reflectometry) which measure dielectric permittivity to ground truth the GPR.  Using this method they hope to be able to predict the depth to anomalies that are observed in the 2D GPR output.

tdr probes

Sensor Installation Pit

After working on this for some time, the engineers at the University of Birmingham continue to deal with challenges related to TDR signal, interpretation, and maintenance.  One challenge is that TDR systems are complex and power hungry. Thus, the researchers were interested in learning more about soil moisture sensing and different technologies that would help them meet their project goals. My first inclination was to solve their problem with water potential sensors.  Many people who work in environmental applications want to know the fate and distribution of water where water potential is the driver.  Interestingly, this is one of the few cases where people actually do need permittivity measurements (the value used to derive volumetric water content, VWC) instead of water potential because they use the actual permittivity signal to ground truth the GPR.  This realization spawned a four-hour discussion on the frontiers of permittivity measurement in soil and the use of advanced analysis techniques to tease out important soil properties such as bulk density, electrical conductivity, and mineralogy.

I hadn’t given much thought to using soil science instrumentation to locating buried infrastructure.  I’m excited to see what the combination of a new technology like GPR and dielectric measurement can do to help us solve everyday problems like where to start digging.

Download the “Researcher’s complete guide to water potential”—>

Download the “Researcher’s complete guide to soil moisture”—>

Get more information on applied environmental research in our

Spectral Reflectance and Water Content in the Wasatch Plateau Experiment

We chose to collaborate with Brigham Young University in an experiment on the Wasatch Plateau in 2009 because a scientist friend of ours had been working in that area the previous five years, and he noticed there were big grazing responses.  The plants growing in the long-term grazed areas were all drought tolerant, while ungrazed plots had plants that were often found only in wetter areas.  The only difference was the fence that kept sheep on one side and not on the other.   The big question was: how does water influence plants in this ecosystem that we understand relatively well? The story had always been the influence of grazers, when in fact, maybe the indirect consequence of grazing was mediated by water.

water

The Wasatch Plateau above Ephraim Canyon, UT, USA.

METER donated some sensors in order to set up an experiment where we changed the amount of water in various plots of land. We had rain exclusion plots, and we had treatments where we collected all incoming rainfall and reapplied it either once a week or every three weeks.   This allowed us to say to what extent this system was controlled by water during the growing season.  To do this, we took measurements with our prototype NDVI Spectral Reflectance Sensor to measure canopy greenness. We also used our prototype volumetric water content sensors to measure soil moisture (this was a few years ago and the sensors were prototypes at the time).  Using these sensors, we found that water is critical in a system people have dismissed as being climate-controlled because it’s at the top of a mountain.

water

A very early prototype of a NDVI sensor measuring canopy greenness in experimental plots on the Wasatch Plateau.

It turns out the amount and timing of precipitation makes a big difference.  We were able to directly connect plant survival, not just to the grazing treatment, but to the actual amount of water that was in the soil. Also, using continuous NDVI data, we were able to look closely at the role of grazing on plant canopies.  When we looked at our NDVI data, we were able to see a seasonal signal, not just a single snapshot sample in time.  So by having the richer data from the data loggers, we obtained a more nuanced understanding of the impact of land use on these important ecological processes.

One of the mistakes we made was failure to include redundancy in the system.  We only had two replicates, so when one of them went down we ended up having just one little case study.  However, that mistake gave us new ideas on how to set up a better system using the right sensors for the job, and it generated a new idea on how to get real-time analysis of data.  In our new Desert FMP project, we have a much better-replicated system where more is invested in the number of sensors that we’re putting out. Each treatment combination will have five to ten water potential sensors.  We are also developing a system where we can analyze data in real-time, so this time we will know when a sensor goes out if a student accidentally kicks it.

 For more details on the Wasatch Plateau Experiment, watch for our published paper that we’ll link to when it comes out.

Download the “Researcher’s complete guide to soil moisture”—>

Get more information on applied environmental research in our