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Posts tagged ‘ecosystem’

Dec 23

Reforestation Challenges Around the World

In the conclusion of our three part series on the reforestation of Banguet province in the Philippines, we asked Dr. Anthony S. Davis, Tom Alberg and Judi Beck Chair in Natural Resources at the University of Idaho, Loreca Stauber, one of the visionaries behind the project, and Kea Woodruff, former U of I Nursery Production and Logistics Associate, now at Harvard University, to explain some challenges associated with teaching reforestation to different cultures.

Ground view of a forest of bamboo looking up

Even with increased environmental awareness, we’re still losing almost thirty million acres of forest globally every year.

What are some of the cultural challenges?

Anthony: As I spend more and more time looking at international forests, I realize that we’re losing forests at a phenomenal rate. Even with all of our awareness about where we get supplies, where trees come from, where wood comes from, and where paper comes from, we’re still losing almost thirty million acres of forest globally every year. That’s terrifying to me. What’s even worse is that most of it comes from countries that don’t have environmental controls.  They don’t have systems in place that keep them from cutting down all the trees. Often, when we cut trees down for forestry, we replant. But, when you start to work in countries where that’s not valued or not part of the culture or the system, then a huge problem emerges.

How do you teach people to grow trees that can survive in their native terrain?

Anthony: There isn’t a lot of knowledge globally about how to grow high-quality tree seedlings. I’ve gotten really interested in the question of how to take a tree seedling which is grown in a nursery, where it essentially has all of the water and all of the nutrients it could possibly ask for, and get it into a condition where it’s likely to survive somewhere extremely harsh: with limited nutrients and water.  How do you get it to the point where it’s able to overcome those challenges?

There are two ways to look at that. One is to get more water to that seedling after it’s planted. The other is to make sure that the seedling you’re planting has its best possible chance of developing a root system that can access water that might not normally be available in those six inches where healthy roots are located when it’s first planted. Based on work that’s be done here at the University of Idaho in graduate student projects over the years, we found that if you can grow a seedling in a healthy manner in the nursery, it’s more likely to grow roots or access water that previously they might not have been able to access.

Researcher works on one of the water tanks that will supply water to the Benguet nursery in the Philippines

Working on one of the water tanks that will supply water to the Benguet nursery in the Philippines. The project is proceeding nicely after a series of setbacks: a destructive typhoon, slides that had to be cleared, 2 deaths, 1 funeral, and electrical power interruptions.

What challenges the plants after they leave the nursery?

Anthony: If that seedling can get roots down and access water, it starts to grow.  The beauty of reforestation, in general, is that it’s very simple; it can be very easy to get trees to grow. However, what often happens is you have a social element that overlaps the biological element. Some of it could be a lack of education, where people don’t understand that a large amount of foliage or leaves on a tree means that you need more water. You think about that image of success: people want to plant the biggest tree possible. That might work in a yard, but it really doesn’t work in a reforestation situation.

What are the challenges of establishing a nursery in a place like the Philippines?

Kea: In the place like the Philippines where resources aren’t necessarily as available, it becomes a huge challenge just finding the right kind of media or container. Also, there’s a decentralization of the knowledge resource itself. While we were there, we had the opportunity to meet with different government agencies, and there are definitely people who know a lot about the species that are available and how to grow them, but in terms of that information being disseminated and widely available to the public, that’s a challenge. The techniques that will be needed to actually produce a seedling resource need to be addressed.  

Loreca:  The basic thing is a good nursery. That has been a problem. In the past, the government, in an effort to green the Philippines, has given seedlings, but oftentimes, these seedlings are so poor in quality that they don’t survive in out planting.

Coffee beans thriving in the tropical Philippines

Coffee beans will thrive in the tropical Philippines.

How can you help other cultures to succeed at reforestation?

Anthony: During some work I was doing in the Middle East, in Lebanon, we found that communicating to people what a high-quality seedling became really important. You teach them about quality, defining it in terms of how much water a plant needs to survive, or how a plant has to grow in order to colonize a site.  We had a lot of success with the project there, getting people to understand that there was a problem in only looking at above ground information in terms of what makes a high-quality seedling. Really, when the roots are what’s driving survival, they’re looking at the wrong part of the picture.

How do you teach people to think beyond the nursery?

Anthony: Our work in Lebanon coincided with a project in Haiti. In Haiti, we had a former student who had been here at the University of Idaho who asked for help starting a nursery. These same conversations occurred: what is a healthy seedling, what is likely to survive, where do you get your seed, how long do you grow it for, when do you plant it?  We were able to have conversations around all of the elements that go into growing trees.

I remember clearly the “aha” moment where this young woman said, “We’ve been doing it wrong! We’ve always focused on growing as many seedlings as possible, and we haven’t worried about quality.”

See it live

Watch a video where Anthony talks about his work.

 

You can learn more about the reforestation programs that the University of Idaho nursery is involved with here.

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Dec 17

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Philippines Part 2: Overcoming Native Challenges with Remote Data

In one of the first agroforestry efforts in mountainous terrain, Moscow, Idaho community leader Loreca Stauber, Dr. Anthony S. Davis, Tom Alberg and Judi Beck Chair in Natural Resources at the University of Idaho, and their partners have initiated a program where U of I students travel overseas to work with farmers of Banguet province in the Philippines to develop the skills needed to grow high quality tree seedlings.  Local vegetable farmers have historically terraced the mountains that have been forested so they could grow monoculture crops, causing serious erosion (read about it here).  The land has degraded so much that the Philippine government has stepped in: warning farmers to begin conservation techniques, or they will take away the land and manage it themselves.

People building a local nursery in Benguet

Building a local nursery in Benguet.

Inspiring Students to Look at the Big Picture

One of the steps in helping local farmers to solve this problem is to create a local nursery where they can start growing native plants and trees.  Fortunately, the University of Idaho has operated a tree nursery for over one hundred years, and they understand how to grow trees. Dr. Davis specializes in setting up native nurseries for growing native plants all over the world. He says, “I want our students to be exposed to this because we’re graduating students who should be problem solvers, who should be able to look at the biggest challenges and contribute their own ideas towards resolving those challenges.”

Loreca Stauber adds, “We are part of the world and the world is part of us. The students can do more than just get their degree and find a job. Anthony and Kea, when they do this, inspire students to look at a bigger world than they are currently living in.”

Training Students to Understand Native Terrain and Resources

Davis says a good plan needs to take local conditions into account:  “The principles of growing trees are actually universal. It doesn’t matter whether you’re in Haiti, Lebanon, Idaho, or in the Philippines. Those principles are the same and they’re readily transferable. It’s how you adapt them to unique local situations that makes a difference.”

Close up on bamboo stalks

“It’s not really about the best way to grow a plant in a greenhouse environment; It’s about the best way to grow a plant that will also survive on its outplanting site.”

Kea Woodruff, former U of I Nursery Production and Logistics Associate, now at Harvard University, says they train the students who go overseas on the “target plant” concept:  designing a growing regime based on what the plant is going to need in its future home. She says, “It’s not really about the best way to grow a plant in a greenhouse environment; It’s about the best way to grow a plant that will also survive on its outplanting site. Determining what the outplanting site is and what each species will need to survive on that outplanting site is what determines greenhouse operations.”

Dr. Davis says you need to consider native resources when doing these types of projects.  “There could be plumbing there, but there’s no guarantee that when you turn the system on, the tap water will come out. That depends on the seasonality of the rains. It’s part of why we wanted the project partners (the farmers) to have data loggers: so we could look at the data together and get a better feel for when water is most abundant and when it’s most scarce, so it can be stored for later use.”

Overcoming Native Challenges with Remote Data

Decagon (now METER) donated data loggers to the program so that Dr. Davis and other people on the team could look at data with the farmers in the Philippines and advise them when to irrigate.  Davis says, “One of the things that’s most important in trying to set up a very remote nursery and manage the production in that nursery from approximately four flights, twelve hours, and twelve time zones away, is knowing what’s going on. There are things that are really easy to ask, like could you send me a picture every Wednesday and Saturday of the nursery, or could you measure the height and the diameter of the seedlings? What’s much harder to tell is how much water is coming in, or what the temperature was during the day or night, because those require people to be monitoring things at a greater frequency than is often possible. If we know how much water is coming into the nursery from rainfall, we can build collection systems so that we can manage where that water goes later on.”

Managing data for both the short and long term is critical, says Davis, because it’s often whether there was rainfall in the predicted amount, and at the right time, that determines whether a seedling establishes or not.

Next week:  The conclusion of our three part series: an interview with Dr. Davis and Kea Woodruff, discussing the cultural challenges of reforestation in different countries.

Acknowledgements:  The SEAGAA agroforestry project in Benguet is agro and forest; the farmers received a grant from the Rufford Foundation based in the UK to build a greenhouse and much of the water catchment system and auxiliary structure that go with a nursery facility.  They also received a sizable grant from the Philippine government to launch mushroom growing as a necessary complement to help support long-term agroforestry. The project is beyond reforestation – it is the growing of trees, shrubs, ground cover, the restoring of watersheds, creating livelihoods, the rebuilding of soil fertility and integrity, the revival of springs which have vanished with the removal of perennial flora, and the restoring biodiversity to bring back the natural checks and balances of a natural ecosystem.

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Dec 11

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Reforestation in the Philippines (Part 1)

In the mountainous Benguet province of the Philippines, farmers grow up to three crops of vegetables a year. Their mountain vegetable farms exist at the expense of original forest cover, causing tremendous erosion difficulties. To counteract erosion and preserve the watershed as well as promote reforestation, the Philippine government issued a mandate: farmers must find alternatives that restore the watershed or lose their land.

Arial view of rice terraces in the Philippines

Rice terraces in the Philippines

An Agroforestry Alternative

Loreca Stauber is no scientist, but she loves Benguet, and a letter from her friend, a scientist living in the Philippines, inspired her with the vision of teaching farmers to reforest the mountains and grow vegetables amongst the trees.  

Her friend writes, “We envision mountain farms as forest ecosystems whose primary social responsibility to the communities around and below is to be part of responsible watersheds that court, catch, store and gradually share water. We see mountain farms that are not prone to soil erosion or leaching: cultivated with minimal chemical inputs and tillage that will allow the natural buildup of biomass, organic matter, helpful organisms and fauna. We think of forest ecosystems that may not make millionaires of its farmers for one generation and heavy debtors even before the next. Rather, we envision forest farm ecosystems that are self-sufficient and self-sustaining. We are working on demonstrating forest ecosystems that can substitute for monocrop vegetable farms that deplete and leach the soil, pollute watersheds and are self-destructing.”  

Realizing the problem in the Philippines could be solved by reforestation, Loreca emailed Dr. Anthony S. Davis, Tom Alberg and Judi Beck Chair in Natural Resources in the University of Idaho’s Department of Forest, Rangeland, and Fire Sciences.  The U of I operates a 100-year-old nursery specializing in growing hardy tree seedlings. Dr. Davis recalls, “The email she sent me said, “I think you should do something about this,”  and I thought, “Actually I agree. I think we should do something about this.  So we began to screen the idea, asking: are there partners?  Is it a good idea?  Does it fit with this little thing that we do really well, which is essentially teaching people how to grow tree seedlings, and is there an educational component that’s valuable for our students?  When those check boxes lined up, then it was a matter of taking advantage of that opportunity and seeing where it could go.”

Green forested mountains in the Philippines

Forested mountains in the Philippines

Determining What Already Works

Together, they and other partners started a program in which U of I students went overseas to teach the people of Benguet how to grow trees, with the goal of moving the land toward agroforestry.  They wanted to grow a forest ecosystem (trees, shrubs, and ground cover) along with annual crops. Kea Woodruff, former U of I Nursery Production and Logistics Associate, now at Harvard University, traveled to the Philippines with an interdisciplinary team of undergraduate and graduate students to look at what agroforestry projects were already working and to conduct a needs assessment.    She says, “I saw a wide variety of landscapes in the areas that we were. One woman decided on her own that she was going to practice agroforestry, and people come and view her land as a demonstration site. It has mature bamboo, coffee trees, and mature Benguet pine. It really looks like what you would expect the native forest to look in an area like the Philippines.”

Kea said there were also intermediate sites where there are Benguet pines and some coffee with row crops blended in, such as strawberries and squash. She adds, “There’s clearly great potential to grow different species on these lands if we can help figure out the best way to use the resources that are available.”

Next week: Learn how partners in the project have been able to use native resources in the quest to reforest erosion-plagued Benguet.

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Dec 4

Understanding the Influence of Coastal Fog on the Water Relations of a California Pine Forest

Forests along the California coast and offshore islands experience coastal fog in summer, when conditions are otherwise warm and dry. Since fog-water inputs directly augment water availability to forests during the dry season, a potential reduction of fog due to climate change would place trees at a higher risk of water stress and drought-induced mortality.  Dr. Sara Baguskas completed her Ph.D. research in the geography department at UC Santa Barbara on how variation in fog-water inputs impact the water relations of a rare, endemic tree species, Bishop pine, located on Santa Cruz Island in Channel Islands National Park. The goal of her study was to enhance our ability to predict how coastal forests may respond to climate change by better understanding how fog-water inputs influence the water budget of coastal forests.

Fog on Trees

Dr. Baguskas’ study seeks a better understanding of how fog-water inputs influence the water budget of coastal forests.

Fog Manipulation

Santa Cruz Island supports the southern extent of the species range in California, thus it is where we would expect to see a reduction in the species range in a warmer, drier, and possibly less foggy future. To advance our mechanistic understanding of how coastal fog influences the physiological function of Bishop pines, Dr. Baguskas conducted a controlled greenhouse experiment where she manipulated fog-water inputs to potted Bishop pine saplings during a three-week drydown period. She installed soil moisture (VWC) sensors horizontally into the side of several pots of sapling trees at two different depths (2 cm and 10 cm) and exposed the pines to simulated fog events with a fog machine.

In one group of plants, Baguskas let fog drip down to the soil, and in another treatment, she prevented fog drip to the soil so that only the canopies were immersed in fog.  She adds, “Leaf wetness sensors were an important complement to soil moisture probes in the second treatment because I needed to demonstrate that during fog events, the leaves were wet and soil moisture did not change.” Additionally, Baguskas used a photosynthesis and fluorescence system to measure photosynthetic rates in each group.

Fog in pine trees from the ground

The fog events had a significant, positive effect on the photosynthetic rate and capacity of the pines.

Results

Dr. Baguskas found that the fog events had a significant, positive effect on the photosynthetic rate and capacity of the pines.  The combination of fog immersion and fog drip had the greatest effect on photosynthetic rates during the drydown period, so, in essence, she determined that fog drip to the soil slows the impact of drydown.  

“But,” she says, “when I looked at fog immersion alone, when the plant canopies were wet by fog with no drip to the soil, I also saw a significant improvement in the photosynthetic rates of these plants compared to the trees that received no fog at all, suggesting that there could have been indirect foliar uptake of water through these leaves which enhanced performance.”  An alternative interpretation of that, Baguskas adds, is that nighttime fog events reduced soil evaporation rates, resulting in less evaporative loss of soil moisture.

Dr. Baguskas says her “canopy immersion alone” data are consistent with other research: Todd Dawson, Gregory Goldsmith, Kevin Simmonin, Carter Berry, and Emily Limm have all found that when you wet plant leaves, it has a physiological effect, suggesting the plants are taking water up through their leaves and not relying as much on soil moisture.  (These authors performed different types of experiments, but their papers serve as reference studies). Baguskas says, “My results suggest that is what’s going on, but it’s not as definitive as other studies that have actually worked on tracking the water through leaves using a stable isotope approach.”  

Lessons Learned

Though Dr. Baguskas did not monitor soil temperature in this study, she says that in the future, she will always combine temperature data with soil moisture data.  She comments, “Consistently, the soil moisture in the “canopy-immersed only” plants was slightly elevated over the soil moisture in the control plants.  It made me wonder if this was a biologically meaningful result. Does it support the fact that if plants are taking up water through their leaves, they don’t rely on as much soil moisture?  Or did my treatment change soil temperature, and is that having a confounding effect on my results?  What I’ve learned from this, is that in the future I will always use soil probes with temperature sensors because you may not know until you see your results if temperature might be important.”

Future Fog Studies

Baguskas is a USDA-NIFA postdoctoral Research Fellow working with Dr. Michael Loik in the Environmental Studies Department at UC Santa Cruz. She continues to study coastal fog, but now in strawberry fields. Her current research questions are focused on integrating coastal fog into water-use decisions in coastal California agriculture. She loves the work and continues to rely on soil moisture sensors to make meaningful and reliable environmental measurements in the field and greenhouse.

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Nov 19

Killing Cheatgrass and Shooting for the Moon

My grandfather, Grant A. Harris, wrote his Ph.D. thesis about the detrimental effects of cheatgrass (bromus tectorum) on rangeland ecology, so I’ve been taught since birth to hate this invasive plant species. So it didn’t surprise me to read that cheatgrass has become the equivalent of an eco-supervillain, wreaking havoc in farmer’s fields, rapidly spreading, and reducing wheat yield—sometimes by fifty percent.  

Microscope focusing on glass panel with sample on it

Washington State University scientist, Dr. Ann Kennedy, has successfully worked with a naturally-occurring soil bacteria that limits the depth of root growth in cheatgrass.

Cheatgrass increases the spread of wildfire, aiding the jump from plant to plant, and it afflicts livestock: lodging in the eyes and mouths of grazing cattle, not to mention having little nutritional value. For years, it’s been tenacious and incredibly prolific, out-competing native grasses and essentially “taking over” the eco-world.  Until now.  This New York Times article spotlights Washington State University scientist, Dr. Ann Kennedy, and her successful work with a naturally-occurring soil bacteria that limits the depth of root growth in cheatgrass, reducing its competitive advantage on the prairie.  

As a scientist, I was intrigued by this article because of what it didn’t say.  Dr. Kennedy, a good friend of mine and a great scientist, once told me that her bacteria experiment was the one she thought least likely to work. She’d looked at it as a kind of “shoot the moon” idea, riddled with “unknowns,” making it risky to spend too much time on.  In fact, she’d only had time to pursue this interesting and challenging experiment because she’d made time for it.

A concentrated solution of bacteria being sprayed on cheatgrass

A concentrated solution of bacteria is sprayed on fields, and over time, the organisms colonize the roots of the cheatgrass.

In a seminar she gave years ago about her work with cheatgrass, Dr. Kennedy shared her simple 60-30-10 prioritization method.  Sixty percent of her research effort was put into core projects she knew would yield publishable papers and keep her lab running.  Thirty percent of her time was spent on challenging projects that were more impactful but less likely to succeed. Finally, she put ten percent of her effort into “shoot the moon” type projects: research that was unlikely to come to fruition, but if successful, would have a dramatic impact in the world.  

In science, it’s easy to get stuck in the purely practical, only spending time on the experiments we know will work. It’s safer and won’t expose us to ridicule when things don’t go the way we hope. But, Dr. Kennedy has proven that there is value in trying things that might fail.  

It’s been more than a decade since I’ve listened to her lecture, but it still impacts the way we do research at METER. Although we spend a lot of time on projects we know will turn into finished instruments, we continue to dream up ways to produce frozen soil moisture release curves or measure leaf water potential. These ideas may not succeed, but if they do, they could have a big impact on the way we make measurements.

As I think about my team’s research priorities and the possibilities of success, I always first consider core projects: What are we really good at?  What will be a sure bet for success?  But because of Dr. Kennedy, I’ll always devote some of my time to more risky endeavors, speculating on what could happen and what might possibly change the world.  

(Read about our most spectacular example of risky research:  the collaboration with NASA’s Jet Propulsion Laboratories to send one of our sensors to Mars.)

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Sep 19

Assessing Erosion Risk after Forest Fires

As forest fires throughout the Northwest die down, one scientist’s work is just beginning.  An article from our archives details the important research that takes place in the aftermath of the flames:

Forest on fire with sun shining through the smoke

In 2015, over eight million acres of forest burned in the United States. Major fires burned in five northwestern states: Washington, Idaho, Montana, Oregon, and California.

Flagstaff, Arizona is typically a dry place. But in August 2010, churning rivers flowed down roadways and around—and through—homes in the Flagstaff area. The floods were caused by a fire—the 15,000 acre Shultz fire that raged around Flagstaff from April to July, 2010.

One might not ordinarily think of a fire causing a flood, but to Forest Service research engineer Dr. Peter Robichaud, the setup is classic. “After a fire, you’ve changed the hydrology of the hillside,” he says. “Normally in an unburned area, rain gets soaked up by forest floor material on the ground and then it soaks into the soil. After a fire goes through, there’s no forest floor material to soak up the water and the soil may become water repellent due to heat from the fire.”

Reduced infiltration means increased runoff and erosion. As Robichaud explains, “If you have a steep slope and high velocities, along with very erodible soil, things converge rather quickly and you can generate debris flows and mudslides.  It’s not just a 100% increase. It’s orders of magnitude increase.”

Burned trees standing in a swampy area covered in water

After a fire, soil commonly becomes hydrophobic, just one factor in increased runoff.

One of Robichaud’s research interests is in designing a model for post-fire erosion. The model helps land managers and assessment teams in the field to evaluate the risks such erosion might pose. “It lets them see what might be affected if they have an erosion event,” he says.

“Is it going to affect the municipal water supply, affect a road crossing, an interstate highway, a school that happens to be at the mouth of a canyon? Once they can estimate the amount of erosion that might occur, they can use the model to help pick treatments to reduce the risk.”

Often practitioners will use the model to establish an early warning system to areas that will be affected.

Along with developing the model, Robichaud has also looked for ways to help postfire assessment teams gauge the water repellency of the soil after a fire. Historically, soil in a burned area was evaluated using the water drop penetration time test, or WDPT. Team members would place a drop of water on the surface of the soil and time how long it took to be absorbed. This seventies-era test was easy to do in the field, but Robichaud wanted something more representative.

Trees and a street covered in a pool of water

One of Robichaud’s research interests is in designing a model for post-fire erosion to help land managers and assessment teams in the field evaluate the risks such erosion might pose.

“I’ve always felt we could do a better job of characterizing the changes in soil condition,” he says. “[The WDPT] doesn’t really represent the physical process of the water infiltrating, because you put a single drop of water on the surface… The ideal method is a rainfall simulator, but it’s not practical in the field. [You] can’t expect every assessment team after a fire to set up a rainfall simulator for a couple of weeks.”

As he looked for alternatives, Robichaud started using a Mini Disk Infiltrometer. Practitioners all over the world use infiltration measurements along with Robichaud’s model of post-fire erosion to assess the impacts of a fire, predict erosion, and make plans to manage and reduce the associated risks. Robichaud’s online Erosion Risk Management Tool allows researchers and assessment teams alike to use scientifically solid analysis. He’s currently involved in refining and validating the model, improving assessment techniques, using remote sensing technology to perform assessments, and looking at alternative post-fire treatment options to reduce erosion risk, among other things.

To see what Dr. Robichaud’s been up to recently, read his 2014 paper, The temporal evolution of wildfire ash and implications for post-fire infiltration, published in the International Journal of Wildland Fire.   Find out more about Robichaud’s research, methods for use of the Mini Disk Infiltrometer for changes in infiltration characteristics after fire, or access the Erosion Risk Management Tool, by visiting the Moscow Forest Sciences Laboratory website.

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Aug 28

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Low Impact Design: Sensors Validate California Groundwater Resource Management

Michelle Newcomer, a PhD candidate at UC Berkeley, (previously at San Francisco State University), recently published research using rain gauges, soil moisture, and water potential sensors to determine if low impact design (LID) structures such as rain gardens and infiltration trenches are an effective means of infiltrating and storing rainwater in dry climates instead of letting it run off into the ocean.

Body of water with rain droplets hitting the surface

Can Low Impact Design Structures store rainwater?

Low Impact Design Structures

Global groundwater resources in urban, coastal environments are highly vulnerable to increased human pressures and climate variability. Impervious surfaces, such as buildings, roads, and parking lots prevent infiltration, reduce recharge to underlying aquifers, and increase contaminants in surface runoff that often overflow sewage systems. To mitigate these effects, cities worldwide are adopting low impact design (LID) approaches to direct runoff into natural vegetated systems such as rain gardens that reduce, filter, and slow stormwater runoff. LID hypothetically increases infiltration and recharge rates to aquifers.

Three pictures the first depicts an aerial view of an infiltration trench, the second depicts an infiltration trench site, and the third depicts a irrigated green lawn

Infiltration and Recharge

Michelle and the team at San Francisco State University, advised by Dr. Jason Gurdak, realized that the effects of LID on recharge rates and quality were unknown, particularly during intense precipitation events for cities along the Pacific coast in response to inter-annual variability of the El Niño Southern Oscillation (ENSO). Using water potential and water content sensors she was able to quantify the current and projected rates of infiltration and recharge to the California Coastal Westside Basin aquifer system. The team compared a LID infiltration trench surrounded by a rain garden with a traditional turf-lawn setting in San Francisco.  She says, “Cities like San Francisco are implementing these LID structures, and we wanted to test the quantity of water that was going through them.  We were interested specifically in different climate scenarios, like El Niño versus La Niña, because rain events are much more intense during El Niño years and could cause flash flooding or surface pollutant overflow problems.”

Infiltration trench site diagram

Sensors Tell the Story

The research team looked at the differences in the quantity of water that LID structures could allow to pass through.  Michelle says. ”The sensors yielded data proving LID areas were effective at capturing the water, infiltrating it more slowly, and essentially storing it in the aquifer.”  The team tested how a low-impact development-style infiltration trench compared to an irrigated lawn and found that the recharge efficiency of the infiltration trench, at 58% to 79%, was much higher than that of the lawn, at 8% to 33%.

Daily time series of precipitation and volumetric water content

Rain Gauges Yield Surprises

Though it wasn’t part of the researchers’ original plan, they used rain gauges to measure precipitation, which yielded some surprising data.  Michelle comments, “We were just going to use the San Francisco database, but it became necessary to use the rain gauges because of all the fog.  The fog brought a lot of precipitation with it that didn’t come in the form of raindrops.  As it condensed on the leaves, it provided a substantial portion of the water in the budget, and that was surprising to me.  The rain gauge captured the condensate on the funnel of the instrument, so we were able to see that a certain quantity of water was coming in that is typically neglected in many studies.”

Future El Niño Precipitation

Michelle also found some really interesting results regarding El Niño and La Niña.  She says, “I did a historical analysis to establish baselines for frequency, intensity, and duration of precipitation events during El Niño and La Niña years.  I then ran projected climate data through a Hydrus-2D model, and the models showed that with future El Niño intensities, recharge rates were effectively higher for a given precipitation event. During these events, in typical urban settings, water runs off so fast that only these rain gardens and trenches would be able to capture the rain that would otherwise be lost to the ocean. This contrasts with a La Niña climate scenario where there’s typically less rain that is more diffuse. Most of that rain may eventually be lost to evaporation during dry years.  So using sensors and 2D modeling we have validated the hypothesis that LID structures provide a service for storing water, particularly during El Niño years where there are more intense rainstorms.”

Michelle’s research received some press online and also was featured in the AGU EOS Editor’s spotlight.   Her results are published in the journal Water Resources Research.

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Aug 22

Author Interview: Soil Physics with Python

The new book Soil Physics with Python: Transport in the Soil-Plant-Atmosphere System written by Dr. Marco Bitteli, Dr. Gaylon S. Campbell, and Dr. Fausto Tomei presents concepts and problems in soil physics as well as solutions using original computer programs.

Picture of the cover of the book "Soil Physics with Python" by Marco Bittelli, Gaylon S. Campbell, and Fausto Tomei

Soil Physics with Python

In contrast to the majority of the literature on soil physics, this text focuses on solving, not deriving, differential equations for transport. Numerical methods convert differential equations into algebraic equations, which can be solved using conventional methods of linear algebra.  Here, Dr. Campbell interviews about this update to his classic book Soil Physics with BASIC.

Why did you write the first book, Soil Physics with BASIC?

Soil physics classes were always frustrating for me because you would spend time writing fancy equations on the chalkboard, and in the end, you couldn’t do anything with them.  You couldn’t solve any of the problems because, even though they involved difficult mathematics, the math was still so simplified that it didn’t apply to anything that went on in nature.

When I taught my first graduate soil physics class, I determined that we were going to be able to do something by the time we finished.  Luckily, in the mid-1970s, personal computers were being developed, and I realized this was the answer to my problem.  Numerical methods could solve any problem with any geometry in it.  It wasn’t limited to problems that fit the assumptions needed to derive a complex differential equation.  I could write computer programs that simplified the mathematics for the students and teach them how to solve those problems using numerical methods.  By the end of the semester, my students would have a set of tools that they could use to solve problems in the real world.  

Did this book come from class notes or some other source?  

I wrote two textbooks and they both came the same way.  When I first started teaching, I had a textbook that was inadequate, so I began writing notes of my own and handing them out to the students.   After two years, I turned these notes into An Introduction to Environmental Biophysics.  Soil Physics with BASIC came about by the same process, but I enlisted the help of my daughter, Julia, to type it up. It was in the early days of word processing so entering equations was quite difficult.  It all went well for her until chapter eight, which was a nightmare of greek symbols. After she finished slogging for days through the material, we somehow lost the chapter.  She retyped it, and we lost it again, making her type it three times!  We didn’t have spreadsheets then either, so the figures were all hand-drawn by my daughter, Karine.

Red soil in the desert with trees and brush around

Marco [Bitteli] has added two and three-dimensional flow problems, so you can model whole landscapes and water behavior in an entire terrain.

What does Soil Physics with Python add to the conversation?

First, it updates the programming language.  BASIC was a language invented at Dartmouth and intended to be a simple teaching language.  It was never supposed to be a scientific computer language.  Python (13:26.) is a newer language, and there are many open source programs for it, making it a better language to use for science.

Secondly, the old book had one-dimensional flow problems in it for the most part, but Marco [Bitteli] has added two and three-dimensional flow problems, so you can model whole landscapes and water behavior in an entire terrain.

In addition, Dr. Bitteli describes the process and analysis of soil treated as fractals as well as soil image analysis.  There are a lot of extensions and updates that weren’t in the original book.  

Will it be accessible across all disciplines?

To some extent, different disciplines speak different languages.  A soil physicist talks about water potential, and a geotechnical engineer talks about soil suction. Thus, there may be some translation of discipline-specific terms, but it’s intended to be a book that people in the plant sciences can use along with people in the soil sciences.

Dr. Marco Bitteli earned his PhD at Washington State University and was Dr. Campbell’s former student.  This book is a product of their continued collaboration. Dr. BBitteli is now a professor at University of Bologna, the oldest university in operation in the world.  Soil Physics with Python  is available at Amazon.com.

Download the “Researcher’s complete guide to water potential”—>

Download the “Researcher’s complete guide to soil moisture”—>

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Aug 14

2 Comments

The Potential of Drones in Research

Someday soon,  multi-rotors will execute pre-programmed flight paths over several hundred research plots collecting daily data and sending it back to a computer while researchers sip their morning coffee.  Researchers and growers won’t need to know anything about flying: the drones will fly themselves.  This is the dream.

One UAV (unmanned air vehicle) industry leader at the above drone demonstration commented, “The truth is that this is where agriculture (and research) is going, and I don’t mean ‘Tomorrowland’ going–I mean it’s pretty much there.  The only thing that’s holding us back is a permit from the FAA for autonomy, and that’s because the FAA is slowly backing into this UAV piece because we have the busiest general aviation sky in the world. But really, what you should have in your mind is multiple units operating with a single operator in a control vehicle.”  The above UAV was extensively tested in California’s NAPA valley with results soon to be published online.

In this blog, a METER scientist and an instrumentation engineer give their perspectives on what needs to happen before drones reach their full research potential.  

Drone hexacopter flying against a blue sky

Drone Hexacopter

What are the advantages of drones for researchers?

Dr. Colin Campbell, research scientist-

One of the biggest challenges of work in the field is variability: low spots, high spots, sandy soil, clay soil, hard pans beneath the surface in some areas and not in others.  This results in highly variable performance in crops.  In addition to that, even when you have good homogeneity in a field, you might have differences due to irrigation or rainfall. If we want to improve agriculture, one thing that we have to do is be able to come out with better tools to be able to visualize the field in more than a single dimension. In order to do this right now, students go out and take plant measurements all day, every day, all summer long. The advantage of a drone is that you could do flyovers of a field, monitoring the traits that you’re interested in using reflectance indices that would normally take days of work.

What are the obstacles to progress?

Greg Kelley, mechanical engineer, and drone hobbyist-   

Recently, the FAA has come out with a set of guidelines for the industrial use of drones:  flying machines have to stay under a certain ceiling (500 ft; 150 m), and they have to be flown in the line of sight of the operator.  The naive thing about those policies is: how much control does the operator have over the drone anyway?  It used to be that with your remote control, you were moving the control surfaces (flaps, rudder, etc) on the aircraft, but this is changing.  The onboard computer performs things like holding a stable altitude, maintaining a GPS location, or auto-stabilization (it keeps the aircraft level, even when a gust of wind comes).  Those are degrees of control that have been taken away from the operator. Thus, according to the level of automation that the operator has built into the system, he may not be in direct control at all times. In fact, these machines are being developed so that they can fly themselves. From my perspective, the FAA regulations are going to have to evolve along with the automation of drones in order to allow the development of this technology in an appropriate way.

Drone with eight rotors sitting on a landing pad

Drone with eight rotors.

What needs to happen before drones reach their full potential?

Dr. Colin Campbell–  

Even if we get the flexibility required with drones, we’ve got to get the right sensor on the drone. On the surface, this seems relatively simple.  Sensors to measure spectral reflectance are available in a package size that should easily mount on a drone platform. But, there are still many challenges.  First, current spectral reflectance sensors make a passive reflectance measurement, meaning we’re at the mercy of the reflected sunlight.  Clouds, sun angle, and leaf orientation, among other things, will all affect the measurement. There are several groups working on this (just search “drone NDVI” on the internet), but it’s a difficult problem to solve.  Second, drones create a spectral reflectance “map” of a field that needs to be geo-referenced to features on the ground to match measurements with position.  Once data are collected, the behavior of “plot A” can only be determined by matching the location and spectral reflectance of “plot A.”  Different from the first challenge, this is more related to programming than science but is still a major hurdle.

Despite these challenges, drones promise incredible benefits as an agricultural and environmental measurement tool. As one industry leader at the drone demonstration put it, “the complexity of the problems that agriculture faces and the opportunities for efficiencies are vast.  It will require ongoing engagement, next year and the year after that. There are a lot of questions to be answered and the efficacy is yet to be determined, but it’s exciting to watch the UAV helicopter and where it’s going.”  Both Campbell and Kelley agree that significant advances will be made within the next few years.

Read about an ROI calculator that’s been created to help growers quantify whether the benefits of using a drone will exceed their costs.

Download the “Researcher’s complete guide to soil moisture”—>

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Jul 11

Great Science Reads: What our Scientists are Reading

We asked our scientists to share the great science reads they’ve perused recently.  Here’s what they’ve been reading:

Open book with Highlighter and Glasses on top of it

Letters to a Young Scientist by E.O. Wilson

Edward Wilson's book "Letters To A Young Scientist"

Steve Garrity: E.O. Wilson is a leader in the science of biology. This book is a simple read. What I like most about it is that it very effectively conveys Dr. Wilson’s passion for science. His thoughts on what it takes to be a successful scientist resonated with me the most.  In describing what it takes to be a successful scientist, E.O. Wilson says that being a genius, having a high IQ, and possessing mathematical fluency are all not enough. Instead, he says that success comes from hard work and finding joy in the processes of discovery. Dr. Wilson gets specific and says that the real key to success is the ability to rapidly perform numerous experiments. “Disturb nature,” he says, “and see if she reveals a secret.” Often she doesn’t, but performing rapid, and often sloppy, experiments increases the odds of discovering something new.

Out of the Scientist’s Garden by Richard Stirzaker

Picture of the cover of "Out Of The Scientist's Garden- A Story Of Water And Food"

Lauren Crawford: “Richard Stirzaker is a scientist out of Australia committed to finding tools to make farming easier and more productive in third world countries.  I love how he talks about what happens when he uses water from his washing machine on his garden and the unanticipated effects: what does the detergent do to the fertilizers and the soil properties?  It’s a scientific view of how a garden works.”

Introduction to Water in California by David Carle

The cover of the book "Introduction To Water In California" by David Carle

Chris Lund: “This is a great introduction to California’s water resources, from where the water comes from to how it is used….particularly relevant today given California’s ongoing drought and the hard choices California faces as a result.”

The Drunkard’s Walk:  How Randomness Rules our Lives, by Leonard Mlodinow

A picture of the cover of the book "The Drunkard's Walk- How Randomness Rules Our Lives" by Leonard Mlodinow

Paolo Castiglione:  “The Drunkard’s Walk’s beginning quote perfectly reflects the author’s thesis: “In God we trust. All others bring data!”. I enjoyed the author’s discussion on how the past century was strongly influenced by ideologies, in contrast to the present one, where data seems to shape people’s actions and beliefs.”

Chapter 13 of An Introduction to Environmental Biophysics, by Gaylon Campbell

A picture of the cover of the book "An Introduction To Environmental Biophysics" by Gaylon S. Campbell and John M. Norman

Colin Campbell:  “Because of teaching Environmental Biophysics class, all my focus has been on reading An Introduction to Environmental Biophysics.  And, although I’ve read it too many times to count, I finally had a chance to study the human energy balance chapter (13) in depth, which was amazing.  The way humans interact with our environment is something we deal with at every moment of every day; often not giving it much thought. In this chapter, we are reminded of the people of Tierra del Fuego (Fuegians) who were able to survive in an environment where temperatures approached 0 C daily, wearing no more than a loincloth. Using the principles of environmental biophysics and the equations developed in the chapter, we concluded that the Fuegian metabolic rate had to continuously run near the maximum of a typical human today. The food requirements to maintain that metabolic rate would be somewhere between the equivalent of 17 and 30 hamburgers per day (their diet was high in seal fat).  You can read more about the Fuegians here.”

Download the “Researcher’s complete guide to soil moisture”—>

Get more information on applied environmental research in our

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