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Posts tagged ‘ecosystem’

Measuring Light and Photosynthesis (PAR): Complicated, but Worth It

Dr. Gaylon S. Campbell discusses how to measure light and photosynthesis (PAR) in canopies and why it’s helpful to researchers.

Dandelion with a bright sun shining on it

The source of all energy on earth is the sun.

The ultimate source of all energy on earth is the sun. Availability of this energy to most organisms occurs through photosynthesis, the conversion of CO2 and H2O to carbohydrates (stored energy) and O2. Photosynthesis occurs when pigments in photosynthesizers absorb the energy of photons, initiating a chain of photochemical and chemical events. Where does this energy and material exchange occur? In plant canopies. The amount of photosynthesis that occurs in canopies depends on the amount of photosynthetically active radiation (PAR) intercepted by leaves in canopies.

Leaf in sunlight on a tree

In canopies, leaves function collectively.

It’s More Complicated Than You Might Think

The rate at which photosynthesis occurs in one leaf might be calculated, but in canopies, leaves function collectively. Extrapolating photosynthesis from individual leaves to entire canopies is complex; the sheer numbers of leaves and their arrangement in the canopy structure can be overwhelming. Leaf area, inclination, and orientation all affect the degree to which light is captured and used in a canopy.

Tree canopy with sunlight breaking through the leaves

Average light level decreases exponentially downward through the canopy.

What Happens to Light in a Canopy?

Light varies dramatically both spatially and temporally through canopies. The average light level decreases more or less exponentially downward through the canopy, as the amount of leaf surface encountered increases. For some canopies, the greatest amount of leaf area occurs near the center. Therefore, canopy structure analysis becomes increasingly complex as one proceeds from a single plant to stands of the same plant, or to plant communities because of the variety of plants and growth forms.

Picture looking up from the ground at a tree canopy with sunlight breaking through the leaves

Photosynthesis depends on leaf orientation.

Absorption of radiation and resulting photosynthesis depend on leaf orientation, sun elevation in the sky, spectral distribution and multiple reflections of light, and the arrangement of leaves. Patterns of light and shaded areas can be complicated and change with the sun’s position. In addition, seasonality of foliage can result in fairly small canopy interception of PAR for much of the year. PAR might also be intercepted by non-photosynthetic parts of plants (bark, flowers, etc).

In two weeks:  Dr. Campbell discusses the impact of leaf arrangement, measuring light in a canopy, and why we measure PAR.

Download the “Researcher’s complete guide to soil moisture”—>

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Do Soil Microbes Influence Plant Response to Heat Waves? (Part II)

Rachel Rubin, PhD candidate at Northern Arizona University and her team at Northern Arizona University are investigating the role soil microbes play in plant response to heat waves, including associated impacts to microbial-available and plant-available water (see part 1). Because heat waves threaten plant productivity, they present a growing challenge for agriculture, rangeland management, and restoration. Below are the results of Rachel’s experiments, some of the challenges the team faced, and the future of this research.

A herd of cows grazing in a pasture

Heat waves present a growing challenge for agriculture, rangeland management, and restoration.

Challenges

Rachel says the experiment was not without its difficulties. After devoting weeks towards custom wiring the electrical array, the team had to splice heat-resistant romex wire leading from the lamps to the dimmer switches, because the wires inside the lamp fixtures kept melting. Also, automation was not possible with this system. She explains, “We were out there multiple times a day, checking the treatment, making sure the lamps were still on, and repairing lamps with our multi-tools. We used an infrared camera and an infrared thermometer in the field, so we could constantly see how the heating footprint was being applied to keep it consistent across all the plots.”

Arizona Fescue plant

Arizona Fescue (image: wickipedia.com)

Some Grass was Heat Resistant

Rachel says her biggest finding was that all of the C4 grasses survived the field heat wave, whereas only a third of the Arizona Fescue plants survived. She adds that the initially strong inoculum effects in the greenhouse diminished after outplanting, with no differences between intact, heat-primed inoculum or sterilized inoculum for either plant species in the field. “It may be related to inoculum fatigue,” she explains, “the microbes in the intact treatment may have become exhausted by the time the plants were placed in the field, or maybe they became replaced, consumed, or outcompeted by other microbes within the field site”. Rachel emphasizes that it’s important to conduct more field experiments on plant-microbe interactions. She says, “Field experiments can be more difficult than greenhouse studies, because less is under our control, but we need to embrace this complexity. In practice, inoculants will have to contend with whatever is already present in the field. It’s an exciting time to be in microbial ecology because we are just starting to address how microbes influence each other in real soil communities.”

Grass going to seed in an open-air field

Diminished effects may be related to inoculum fatigue.

What’s In Store?

Now that the team has collected data from the greenhouse and from the heat wave itself, they have started looking at mycorrhizal colonization of plant roots, as well as sequencing of bacterial and archaeal communities from the greenhouse study. Rachel says, “It’s quite an endeavor to link ‘ruler science’ plant restoration to bacterial communities at the cellular level. I’m curious to see if heat waves simply reduce all taxa equally or if there is a re-sorting of the community, favoring genera or species that are really good at handling harsh conditions.”

Download the “Researcher’s complete guide to soil moisture”—>

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Do Soil Microbes Influence Plant Response to Heat Waves?

Rachel Rubin, PhD candidate at Northern Arizona University, is interested in the intersection of extreme climate events and disturbance, which together have a much greater impact on plant communities. She and her team at Northern Arizona University are investigating the role soil microbes play in plant response to heat waves, including associated impacts to microbial-available and plant-available water.

Wheat with sun shining through it

Plants have a tight co-evolutionary history with soil microbes. It has been said that there is no microbe-free plant on earth.

Because heat waves threaten plant productivity, they present a growing challenge for agriculture, rangeland management, and restoration.

Can Soil Microbes Increase Heat Resistance?

Many plants maintain mutualistic associations with a diverse microbiome found within the rhizosphere, the region of soil that directly surrounds plant roots. These “plant growth-promoting rhizobacteria” and arbuscular mycorrhizal fungi provision limiting resources including water, phosphorus and nitrogen in exchange for photosynthetically derived sugars. However, we understand very little about whether extreme events can disrupt these interactions.

Tubes of layered dirt

Fig. 1. Fine roots exploring the inoculum that was added as a band between layers of potting mixture.

Rachel and her team exposed rhizosphere communities to heat stress and evaluated the performance of native grasses both in the greenhouse, and transplanted under an artificial heat wave. They hypothesized that locally-sourced inoculum (a sample of local soil containing the right microbes) or even heat-primed inoculum would help alleviate water stress and improve survival of native grasses.

The Experiments

Rubin started in the greenhouse by planting Blue Grama (Bouteloua gracilis, C4 grass) and Arizona Fescue (Festuca arizonica, C3 grass) and assessed their responsiveness to locally collected soil inoculum that had either been left intact, pre-heated or sterilized (Fig. 1). Rubin says, “We expected that our plants would benefit the most from having intact soil microbe communities. But, we were surprised to find very large differences between plant species. Blue Grama performed the best with intact inoculum, whereas Arizona Fescue performed better with pre-heated or sterilized soil”. This could mean that Blue Grama is more dependent on its microbiome, whereas Arizona Fescue engineers a rhizosphere that contains more parasitic microbes rather than mutualistic microbes. Rachel says that understanding this relationship is important for tailoring plant restoration projects to local conditions. Plants that exhibit high levels of mutualisms with their rhizosphere might require an extra inoculum “boost” in order to successfully establish in highly degraded soil, whereas we should not bother to inoculate plants that tend to harbor parasites within their rhizosphere.

Research plot using infrared sensors and METER soil water content and soil water potential sensors

Fig. 2. A heated plot in the foreground connected to infrared lamps, water content and matric potential sensors, and EM50 data loggers.

After the team studied these responses, they planted the grasses into a degraded section of a grassland and installed an array of 1000-Watt ceramic infrared lamps mounted on steel frames (Fig. 2) to address whether inoculation influenced plant performance and survival. With help from a savvy undergraduate electrical engineering major (Rebecca Valencia), Rubin simulated a two-week heat wave while monitoring soil temperature and moisture using water content and water potential sensors.  She also measured plant performance (height, leaf number and chlorophyll content) before, during, and after the event. Control plots had aluminum “dummy lamps” to account for shading.

An infrared photo of the expirement

An infrared photo, which is how Rachel determined that the heating footprint was evenly distributed on all the plants. The scale bar on the right is in degrees C.

Data obtained from soil sensors helped Rachel to measure heating treatment effects as well as rule out a potential cause for plant mortality: soil moisture. “Soil temperature was on average 10 degrees hotter in heated plots than control plots, but matric potential and soil water content were completely unaffected by heating. This tells us that the grasses died from reasons other than water stress– perhaps a top-kill effect.” Although growing concern over heat waves in agriculture is centered around accompanying droughts, this experiment demonstrates that heating can produce negative effects on some species even when water is in plentiful supply.

Next week:  Learn the results of Rachel’s experiments, some of the challenges the team faced, and the future of this research.

Download the “Researcher’s complete guide to soil moisture”—>

Download the “Researcher’s complete guide to water potential”—>

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Which Factors Make Rain Gardens More Effective? (Part 2)

Scientists often evaluate Low Impact Development (LID) design by quantifying how much stormwater rain garden systems (cells) can divert from the sewer system.  But Dr. Amanda Cording and her research team want to understand what’s happening inside the cell in order to improve the effectiveness of rain garden design (see part 1).  Below are the results of their research.

Picture of yellow flowers

Deep rooted systems were found to have a much better ability to hold the soil in place and remove nutrients.

Key Findings

Cording says that some of her key findings were that the soil media and vegetation selection is absolutely crucial to the performance of these systems. Cording’s team looked at the root layering perspective in three dimensions and found that deep rooted systems were found to have a much better ability to hold the soil in place and remove nutrients throughout the life cycle of the cell. The more surface area the roots covered, the more pollutants the cell would remove.  She adds, “Cells with deep-rooted plants were found to be resilient during increased precipitation due to climate change, did well at retaining peak flow rates, and performed well at removing total suspended solids and nutrients predominantly associated with particulates.”  Labile nutrients, Cording says, were a completely different story. She says the bioretention systems have to be specifically designed to remove  those nutrients through sorption (P) and denitrification (N).

Researcher holding dirt in cupped hand

Compost was found to have a negative effect on water quality.

Compost, which is often used as an organic amendment in the soil media to help remove heavy metals and provide nutrients for the plants, was found to have a negative effect on water quality overall, due to the high pre-existing labile N and P content. She says, “It’s intuitive, but at the same time, a lot of these systems are designed based on bloom time and color, and not necessarily on the physical and chemical pollutant removal mechanisms at work.”

Green algal bloom in a freshwater lake

Green algal bloom in a small freshwater lake in New Zealand. (Image: Massey University)

What Lies Ahead?

Cording also tested a proprietary bioengineered media in two of her cells which was designed to remove the phosphorous that causes algal blooms in the rivers and streams.  She says, “It did a phenomenal job. There was very little phosphorous coming out compared to the traditionally-designed retention cells.  Cording, who is now based in Honolulu and works for an ecological engineering company called EcoSolutions, is looking at how to use natural, highly-leached iron rich soils, to get a similar amount of phosphorous removal, and how bioretention can be designed with anoxic storage zones to remove nitrate via denitrification. She says, “These nutrients can be easily removed from stormwater with a little conscious design effort and a splash of chemistry.”

Download the “Researcher’s complete guide to soil moisture”—>

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Which Factors Make Rain Gardens More Effective?

Low Impact Development (LID) is an approach to development (or re-development) that mimics pre-development hydrology and uses ecological engineering to remove pollutants in stormwater and wastewater so it can be reused or replenish groundwater supplies. Examples of LID features include porous pavement, constructed wetlands, green roofs, and rain gardens. LID stormwater bioretention systems such as rain gardens have been proven to work, but are they designed as effectively as they could be?  Dr. Amanda Cording (formerly at the University of Vermont) and her team wanted to understand which design factors would make rain gardens more resilient, increase phosphorus adsorption, and reduce nitrates.

Rain Garden aerial view

Cording and her team wanted to understand what was happening inside bioretention cells.

What’s Happening Inside?

Scientists often evaluate LID design by quantifying how much stormwater the systems (cells) can divert from the sewer system.  But Cording and her team wanted to understand what was happening inside the cell.  They wondered which types of soil media and infrastructure would optimize a stormwater bioretention system’s ability to improve water quality.  She says, “We wanted to gather water quality information coming in and going out of the system. I designed inflow and outflow monitoring infrastructure to measure nutrient and sediment pollution.”   The system monitored pollution by sampling stormwater runoff from a paved road surface before and after it went through bioretention cells. Each cell was constructed with different features to test the influence of vegetation and soil media on pollutant removal capabilities.

Bioretention cells diagram

Bioretention cells at the newly constructed Bioretention Laboratory at the University of Vermont.

Methods Used

To understand what was happening within eight bioretention cells at the newly constructed Bioretention Laboratory at the University of Vermont, Dr. Cording and her team investigated the mechanisms influencing greenhouse gas emissions and nutrient transformations at various depths in engineered soil media. In addition to using her own monitoring infrastructure, Dr. Cording used soil moisture sensors to measure water content within the soil media. She says, “I was comparing different vegetation treatments while simulating increased precipitation due to climate change in the Northeast.  I put the soil probes in at 5 cm and 61cm, one on top of the other.  Then I looked at the way the EC and the volumetric water content (VWC) changed prior to a storm event, during a storm event, and after a storm event.”

Garden in bloom in the rain

One of the team’s bioretention cells at the University of Vermont.

Cording says the EC and VWC sensors allowed them to get a general sense of what was happening inside the cell over time.  She adds, “I used the data when I needed to know more of the story, such as how the conductivity at the surface compared to other depths so we could see if the nutrients in the soil were migrating, and how much was moving down.  We were also able to use the sensors to compare the VWC around the roots of different vegetation types. It provided a lot of insight into the dynamic world that exists below the soil surface.”

Next Week:  Read about the team’s key findings and what lies ahead for this research.

Download the “Researcher’s complete guide to soil moisture”—>

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Crowdsource Your Data Collection?

What can you do when you need data from all over the world in a short amount of time?  Many scientists, including ones at JPL/NASA, are crowdsourcing their data collection.

Close up of microbes

Projects range from ground truthing NASA satellite data, to spotting migration patterns, to collecting microbes.

Darlene Cavalier, Professor of Practice at Arizona State University is the founder of SciStarter, a website where scientists make data collection requests to a community of volunteers who are interested in collecting and analyzing data for scientific research.

Who Collects the Data?

SciStarter was an outgrowth of Cavalier’s University of Pennsylvania graduate school project where she sought to connect people who didn’t have formal science degrees with scientists who needed their help.  She says, “We know from various National Science Foundation reports that many people without science degrees are interested in participating in and learning about science. The challenge was that there was no easy way to find those opportunities.”

Image of a purple Orchid

One project invites UK citizens to find and take pictures of orchids.

Cavalier started SciStarter, in part, to create a “one-stop shop” resource where people could easily search and find projects best suited to their locations and interests.  She says, “We have over 1,600 projects and events.  Projects range from ground truthing NASA satellite data, to spotting migration patterns, to collecting microbes.”  One project, sponsored by the National History Museum in London, invites UK citizens to find and take pictures of orchids with their smartphones, so scientists can study the effect of climate change on UK flowering times.

How Are Volunteers Recruited?

Volunteers are recruited through SciStarter’s partnerships with the National Science Teachers Association, Discover Magazine, the United Nations, PBS and more. One of the most visible ways that volunteers are enlisted is through an organization Cavalier started called Science Cheerleader.  The organization consists of 300 current and former NFL and NBA cheerleaders who are scientists and engineers.  These role models visit youth sports groups, go to science festivals, and talk in schools.  During their appearances they engage people of all ages in actual citizen science projects. Darlene says, “This is our way of casting a wide net and making new audiences aware of these opportunities.”

Researcher taking samples

Science cheerleader consists of 300 current and former NFL and NBA cheerleaders who are now scientists and engineers.

What’s the Ultimate Goal?

Cavalier is determined to create pathways between citizen science and citizen science policy. She says, “The hope is after people engage in citizen science projects, they will want to participate in deliberations around related science policy. Or perhaps policy decision makers will want to be part of the discovery process by contributing or analyzing scientific data.”  Darlene has partnered with Arizona State University and other organizers to form a very active network called Expert and Citizen Assessment of Science and Technology (ECAST).  This group seeks to unite citizens, scientific experts, and government decision makers in discussions evaluating science policy. Cavaliers says, “The process allows us to discover ethical and societal issues that may not come up if there were only scientists and policy makers in a room.  It’s a network which allows us to take these conversations out of Washington D.C.  The conversations may originate and ultimately circle back there, but the actual public deliberations are held across the country, so we get a cross-section of input from different Americans.” ECAST has been contracted by NASA, NOAA, the Department of Energy, and others to explore specific policy questions that would benefit from the public’s input.

Image of the capital building

ECAST is a network which allows us to take science policy conversations out of Washington D.C.

Overcoming Obstacles

Cavalier says the SciStarter team constantly works to remove challenges and impediments to public participation. She explains, “We’ve found it can be difficult to articulate the geographic bounds of a project because when a researcher says, “this project can be done in a watershed,” it doesn’t mean anything to most people.  So SciStarter spent time developing a system of “Open Streetmap and USGS databases that show land-type coverage.”

Another obstacle to some types of research is access to instrumentation.  Darlene comments, “The NASA Soil Moisture Active Passive (SMAP) project really opened our eyes to how many obstacles can exist between the spectrum of recruiting, training, equipping, and fully engaging a participant.”  This year, SciStarter is building a database of citizen science tools and instruments and will begin to create the digital infrastructure to map tools to people and projects through a “Build, Borrow, Buy” function on project pages.

Image of the world from a satellite view

“The NASA Soil Moisture Active Passive (SMAP) project really opened our eyes to how many obstacles can exist to full engagement.”

What’s Next?

Darlene says that sometimes scientists who want accurate data without knowing about or identifying a particular sensor for participants to use often create room for data errors.   To address this problem, SciStarter and Arizona State University will be hosting a summit this fall where scientists, citizen scientists, and commercial developers of instrumentation will meet to determine if it’s possible to fill gaps to develop and scale access to inexpensive, modular instruments that could be used in different types of research.  You can learn more about crowdsourcing your data collection with SciStarter here.

Download the “Researcher’s complete guide to soil moisture”—>

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Lysimeters Determine If Human Waste Composting Can Be More Efficient (Part 2)

In Haiti, untreated human waste contaminating urban areas and water sources has led to widespread waterborne illness.  

Hospital rooms in Haiti with patients infected with cholera

Waterborne disease is the leading cause of death for children under 5. Currently, Haiti is battling the largest cholera outbreak in recent history. Over 1/6 of the population is sickened to date.

Sustainable Organic Integrated Livelihoods (SOIL) has been working to turn human waste into a resource for nutrient management by turning solid waste into compost.  (See part 1).  

Water ways infected with waste and trash

Contaminants making their way into the waterways.

The organization plans on performing experiments with lysimeters, to determine if human waste will contaminate Haitian soil during the composting process.

A river infected with waste right below a huge forest

Even in places where there are toilets, they are often poorly designed or poorly placed. This latrine is located just above a river, where people are getting their bathing and drinking water.

Lysimeters Help Assess Health Hazards

SOIL will use G3 passive capillary lysimeters in an experiment to determine if composting human waste without a barrier between the waste and the soil will result in ecological and/or health hazards.  Why? The problem is “jikaka,” or “poo juice.”  The compost facility currently redistributes it onto the compost and finishing piles, but they would rather not have to manage it. They believe if they remove the concrete slab and allow composting to occur in contact with soil, the composting process will be easier and faster.

Mounds of dirt behind a tree

SOIL’s agricultural team conducts studies on the use of compost to improve farming practices and maximize economic benefits of targeted compost application.

The Experiment

The organization will test their idea as they expand their facility. New compost bins and staging areas for finishing have been built absent concrete pads. G3 passive capillary lysimeters have been installed, three beneath the compost bin, and four beneath the first staging area for finishing. They will be used to monitor the amount of moisture (jikaka) that travels through the soil as well as check for anything harmful that travels with it.

Children holding soil in their hands

SOIL’s human waste compost was found to increase sorghum yields by 400%.

What’s the Future for Konpòs Lakay?

SOIL’s agricultural team studies the use of their compost (Konpòs Lakay) in order to optimize farming practices and the economic benefits of targeted compost application. The data they collect will help them expand the market for Konpòs Lakay, which in turn will support the sustainability of SOIL’s sanitation programs.

For more information on SOIL’s waste treatment efforts, visit their website, or watch the video below, a TEDx talk given by SOIL co-founder, Sasha Kramer.

Discover G3 Drain Gauge passive capillary lysimeters→

Download the “Researcher’s complete guide to soil moisture”—>

Lysimeters Determine If Human Waste Composting Can Be More Efficient

In Haiti, untreated human waste contaminating urban areas and water sources has led to widespread waterborne illnesses such as typhoid, cholera, and chronic diarrhea.

Human wastes are making their way into Haiti’s waterways.

Human wastes are making their way into Haiti’s waterways.

Sustainable Organic Integrated Livelihoods (SOIL) has been working since 2006 to shift human waste as a threat to public health and source of pollution to being a resource for nutrient management by turning solid waste into compost.  This effort has been critical to sustainable agriculture and reforestation efforts, as topsoil in Haiti has severely eroded over time, contributing to Haiti’s extreme poverty and malnutrition.

Border between Haiti and the Dominican Republic from an aerial view

This is a very famous image of the border between Haiti and the Dominican Republic. It’s often used to demonstrate how badly off Haiti is relative to their neighbors. What you’re actually seeing is the environmental scars of a very different post-colonial history.

Why Compost?  

Topsoil erosion in Haiti was estimated to be 36.6 million metric tons annually in 1990, and it is estimated that only one sixth of the land currently cultivated in Haiti is suitable for agriculture. SOIL combats desertification by producing over 100,000 gallons of agricultural-grade compost made from human waste annually.  SOIL research has shown that this compost can increase crop yields by up to 400%.  The organization has sold over 60,000 gallons of this compost to local farmers and organizations, increasing soil organic matter and nutrients throughout the country.

Waste covers the urban area infecting people and causing problems

Today in Haiti, only 25% of people have access to a toilet – meaning people are forced to go to the bathroom outside or in urban areas, in a plastic bag, which often times gets disposed of in a canal or an empty lot.

How Do They Do It?

SOIL distributes specially constructed toilets throughout Haiti that separate urine from solid waste.  Odors are reduced by covering the solid waste with organic cover material.  The toilet utilizes a five gallon bucket to collect solid waste that can be swapped out when full.

Toilet in Haiti

Instead of flushing nutrients away with fresh water, people use a dry carbon material to cover it up so that it doesn’t smell, and it doesn’t attract flies. This material also provides food for the microbes that will ultimately transform the poop.

The five gallon buckets are collected weekly and taken to the composting facility, where they are dumped into large composting bins.  It takes about 1500 buckets (3-4 days worth) to fill each bin. Bins are required to reach 122°F and left for 2.5 months in order to kill all pathogens.

Waste water transformation chart

Wastes are safely transformed into nutrient-rich compost in a carefully monitored composting treatment process that exceeds the World Heath Organization’s standards for the safe treatment of human waste.

The compost is then removed from the bin and turned by hand. There are three concrete slabs used to manage the finishing process.  Compost is turned horizontally and then moved forward to the next slab, allowing multiple batches to be finishing at the same time, each at a different stage.  After processing, the compost is sifted, bagged, and sold, reinvigorating the agriculturally-based Haitian economy.  

Students study plants sold for agriculture

The compost SOIL produces is bagged under the Haitian Creole brand name “Konpòs Lakay” and then sold for agricultural application, improving both the fertility and water retention of soil. With over four billion people worldwide currently lacking access to waste treatment services, finding ways to provide waste treatment services profitability through the private sector has the potential to dramatically improve public health and agricultural outputs globally.

Continue reading part 2→

Understand the Impact

Watch this 5 minute video filmed by independent parties to see how SOIL is impacting Haitian citizens and the environment.

Read how experiments using lysimeters will help SOIL make the composting process more efficient.  

Download the “Researcher’s complete guide to soil moisture”—>

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Founders of Environmental Biophysics: Champ Tanner

Champ Tanner

Champ Tanner (November 16, 1920 – September 22, 1990) Image: soils.wisc.edu

We interviewed Gaylon Campbell, Ph.D. about his association with one of the founders of environmental biophysics, Champ Tanner.

Who was Champ Tanner?

Champ Tanner was a dominant scientist in his time and a giant among his colleagues.  He was the first soil scientist to be elected a member of the National Academy of Sciences: the highest honor a scientist can achieve in the United States.  Some may not realize that throughout a career filled with achievements and awards, he battled the challenges of a debilitating illness.  He didn’t let that limit his passion for science, however.  His efforts to understand and improve measurements generally went beyond those of his fellow scientists.  One of his colleagues once said of him, “Champ’s life exemplified goal-oriented determination and optimism regardless of physical or financial impediment.”

Green wheat stalks

Dr. Tanner was one of the pioneers in applying micrometeorology to agriculture.

What were his scientific contributions?

Champ was an extremely careful experimentalist who was gifted at developing instrumentation.   He started out making significant contributions in soil physics such as improved methods for measuring water retention, particle size distribution, air-filled porosity, and permeability.  He was one of the pioneers in applying micrometeorology to agriculture and was passionate about finding ways to improve the precision and reliability of measurements.  No measurement was too difficult.  He designed and built his own precise weighing lysimeters which provided measurements of evapotranspiration in as little as 15 minutes.   Later, he switched to plant physiology, reading almost every published paper on the subject and then building his own thermocouple psychrometer and plant pressure chambers, making important contributions in that field.

His largest contribution, however, was the measure of excellence he inspired in the students that he trained.   I don’t know of anybody, anywhere in the world, that produced a crop of students that has attained the levels that his have.  They’ve all made enormous contributions in many different fields.  Perhaps it was because he was a pretty hard taskmaster.   He expected the students to meet a standard, and the ones that struggled with that had a hard time. In fact, to this day one former student complains, “About once a year, I have a nightmare in which Champ appears.”

Boy walking through a library

I don’t know of anybody, anywhere in the world, that produced a crop of students that has attained the levels that his have.

Champ wanted his students to measure up, but he also cared about them.  His fellow scientist, Wilford Gardner, described him this way, “There was a transcendent integrity to his personality that permeated everything he did.  He could be blunt, candid and forthright, but he was never lacking in compassion and concern for students, colleagues, and friends.”

What was your association with him?

I had a wonderful relationship with Champ, although I wasn’t one of his students. One of his former students came to WSU as a visiting scientist and told him about what I was working on.  As a result, he brought me into his inner circle of associates and played a vital role in the success of my research.  This association even extended to my family who were with me on one of my many trips to Madison. Despite my numerous and occasionally unruly progeny, he and his wife welcomed us like long lost relatives and made each of the children feel special.  That’s who they were: the most caring and outgoing people.

Champ also had a sense of humor.  He used to call me up to have long discussions about science, and because he was two time zones ahead, it would get pretty late for him. We’d be having an intense discussion about experimentation, and all of a sudden he’d stop and say, “Oh, I’d better cut this off, or I’ll get home to a cold supper and a hot wife.”

What kind of a person was he?

If you worked in his lab, you needed to tow the mark.  You didn’t leave tools around, and you didn’t mess them up. If you left out a screwdriver, you’d find it on your desk the next morning with a terse note.  And if you took the diagonal pliers, cut some hard wire with it and left some nicks, those would be on your desk too. It was a sort of tough love, but he used it to train his students to the highest possible level.  

Researcher looking through a microscope

He taught his students to be rigorous in their measurement protocols

He wanted his students to stand up and argue for their point.  If you were the kind of person that could stand your ground and put up a good defense, he loved that.  Gardner described Champ in this way, “His work hours were legendary.  His standards of science and personal integrity were almost unrealistically high.  The stories his students now pass on to their students may sound apocryphal to those who did not know Champ.  But it was impossible to exaggerate where Champ was concerned.”

What do you think scientists today can learn from him?

What we can learn from Champ Tanner is not to fool ourselves.  He thought you should try to come to an answer in a few different ways, to be sure that it really was the answer. He taught his students to be rigorous in their measurement protocols in order to get the noise out of their experiments.  He wanted them to dig to the bottom of problems and understand the details.  In his mind, you couldn’t be a scientist and rely on somebody else to figure out heat transfer or radiation. He thought you should understand it well enough that you could defend it yourself.   

You can read more about Champ Tanner’s life and scientific contributions in this biographical sketch, written for the National Academy of Sciences when he died.

Download the “Researcher’s complete guide to soil moisture”—>

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Are Biodegradable Mulches Actually Better for the Environment?

Henry Sintim, PhD student at Washington State University, is investigating whether biodegradable mulches are, in fact, what they claim to be.

Plant row farm with dirt between each row

Application of plastic mulches conserves water, and helps in weed, pest, and disease control.

He and his research team want to understand what leaches into the soil as the mulches degrade and which ones perform as well as polyethylene-made plastic mulches (PEs) at weed, pest, and disease control.

Plastic Mulch

Application of plastic mulches in agriculture is a common practice by specialty crop producers worldwide. It conserves water, and helps in weed, pest, and disease control, subsequently improving crop yield and quality. Because PE is durable and does not degrade in the soil, you cannot leave it in the field, which ultimately leads to the question of disposal.  When PE is buried in the field, it becomes contaminated with soil and can’t be recycled but instead requires transport to a landfill, increasing production costs. Another problem arises when landfill facilities are not available. When this is the case, growers stockpile PE on their farm, where the rain can wash the mulch down to streams and water bodies. Henry Sintim and his team are investigating whether or not biodegradable plastic mulches (BDMs) could be a viable alternative.

Researchers digging a site up for installation

The team installs a lysimeter beneath the mulches.

Biodegradable Alternatives

Substituting PE with BDM could alleviate the need for disposal. However, Sintim says the potential impact on agricultural soil ecosystems needs to be assessed before adopting biodegradable mulch for field use. For instance, do biodegradable mulches really degrade?  Sintim explains, “By BDM, we mean it is plastic mulch, but it has been made from pure or partial biobased materials. Though there are plastic mulches advertised as biodegradable, none have actually been proven to biodegrade, so the team is examining degradation of different commercial BDM types over time. They have also included an experimental BDM, in which the constituents were specified by the team.”

Sintim is monitoring the degradation of BDM by assessing the material properties and measuring the particle size and surface area via photography: digitizing and analyzing them using Image J software.

Researchers standing at an installation getting data

There are indications that some of the BDMs are performing well.

How Well Do the Mulches Compare?

Sintim also wants to find out how well BDMs maintain microclimate in comparison to PE. Since soil temperature and moisture content are important parameters that govern chemical reaction rates and microbial activity, and are likely to vary among the different BDM treatments, he is monitoring soil moisture dynamics using soil moisture and temperature sensors installed at 10 cm and 20 cm depths. In addition, the team has installed sensors directly underneath the mulches to measure surface temperature and light penetration. Reduction of light penetration is the attribute that helps plastic mulches to control weeds. The team is also assessing soil quality using the USDA Soil Quality Test Kit.  

Sintim says so far one of the commercial BDMs and the experimental BDM had the same yield performance as PE.  He adds, “We don’t have final results yet, and there are a lot of variables that could come into the picture. But I will say there is an indication that some of the BDMs are performing well.”

Next week:  Find out how Sintim will determine what’s leaching into the soil and another alternative for polyethylene plastic mulch.

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